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WormBase Tree Display for Gene: WBGene00006321

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Name Class

WBGene00006321SMapS_parentSequenceT22B2
IdentityVersion2
NameCGC_namesup-12Paper_evidenceWBPaper00024604
WBPaper00000807
Sequence_nameT22B2.4
Molecular_nameT22B2.4a
T22B2.4a.1
CE13934
T22B2.4b
CE42801
T22B2.4b.1
T22B2.4b.2
Other_nameCELE_T22B2.4Accession_evidenceNDBBX284606
Public_namesup-12
DB_infoDatabaseAceViewgeneXE525
WormQTLgeneWBGene00006321
WormFluxgeneWBGene00006321
NDBlocus_tagCELE_T22B2.4
PanthergeneCAEEL|WormBase=WBGene00006321|UniProtKB=O45189
familyPTHR11176
NCBIgene180674
RefSeqproteinNM_076273.5
NM_001392755.1
TREEFAMTREEFAM_IDTF314235
TrEMBLUniProtAccH2L051
O45189
UniProt_GCRPUniProtAccO45189
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:40WBPerson1971EventImportedInitial conversion from geneace
214 Mar 2005 15:30:47WBPerson2970EventAcquires_mergeWBGene00020668
Acquires_mergeWBGene00020668
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsup
Allele (80)
Legacy_informationst89 : recessive suppressor of unc-60(e677) and at least two other unc-60 alleles (e723 e890); abnormal gonad and minor changes in body wall muscle ultrastructure alone; ES3 in presence of e677. NA > 10.
[C.elegansII] st89 : recessive suppressor of unc-60(e677) and other unc-60 alleles; (e723, e890);alone, abnormal gonad and minor changes in body wall muscle ultrastructure ES3 in presence of e677. OA>10: st86 (suppresses lethal allele unc-60(s1586) to viable ts sterile phenotype), etc. [Francis and Waterston 1985; BC]
StrainWBStrain00001641
WBStrain00001906
WBStrain00033510
WBStrain00036719
RNASeq_FPKM (74)
GO_annotation (16)
OrthologWBGene00051908Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00034854Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00140351Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00125495Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00226170Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2487Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g76Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10110Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12591Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10410Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g462Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15975Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g356Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10938Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26583Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22441Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-sup-12Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18243Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00336.g9649Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00757Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024174Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01351Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g6309Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0263800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18834Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240048Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00114030Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00258182Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00301197Trichuris murisFrom_analysisWormBase-Compara
WBGene00301263Trichuris murisFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-030131-5923Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-040628-1Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-060312-43Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:15818Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:21539Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
MGI:1889294Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
MGI:3610364Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1308503Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
RGD:1584029Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
Paralog (15)
Structured_descriptionConcise_descriptionsup-12 encodes an RNA-binding protein that contains a conserved RNA recognition motif (RRM); during development, SUP-12 functions as a muscle-specific splicing factor to regulate alternative pre-mRNA processing of unc-60 and egl-15 transcripts; in vitro, SUP-12 can bind intronic regions of the unc-60 and egl-15 pre-mRNAs; specifically, SUP-12 binds the unc-60 intron 1A cooperatively with ASD-2, with which it physically interacts, to regulate alternative unc-60 pre-mRNA processing; a sup-12::gfp promoter fusion is expressed in body wall muscle and the pharynx; in body wall muscle, SUP-12::GFP localizes to nuclei in a speckled pattern.Paper_evidenceWBPaper00024604
WBPaper00031074
WBPaper00041641
WBPaper00041980
Curator_confirmedWBPerson1843
Date_last_updated12 Mar 2013 00:00:00
Automated_descriptionEnables pre-mRNA intronic binding activity and single-stranded RNA binding activity. Involved in several processes, including alternative mRNA splicing, via spliceosome; regulation of actin cytoskeleton organization; and regulation of alternative mRNA splicing, via spliceosome. Located in nuclear speck. Part of ribonucleoprotein complex. Is an ortholog of human RBM24 (RNA binding motif protein 24) and RBM38 (RNA binding motif protein 38).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST22B2.4a
T22B2.4b
Corresponding_CDS_historyT22B2.4:wp192
Corresponding_transcriptT22B2.4a.1
T22B2.4b.1
T22B2.4b.2
Other_sequence (49)
Associated_feature (12)
Experimental_infoRNAi_resultWBRNAi00053785Inferred_automaticallyRNAi_primary
WBRNAi00062574Inferred_automaticallyRNAi_primary
WBRNAi00035785Inferred_automaticallyRNAi_primary
WBRNAi00062575Inferred_automaticallyRNAi_primary
Expr_patternChronogram849
Expr3470
Expr6740
Expr6741
Expr1028589
Expr1032553
Expr1157336
Expr2017125
Expr2035261
Drives_constructWBCnstr00002480
WBCnstr00004354
WBCnstr00011407
WBCnstr00034396
Construct_productWBCnstr00011407
WBCnstr00034396
AntibodyWBAntibody00000799
Microarray_results (22)
Expression_cluster (165)
Interaction (46)
Map_infoMapXPosition-9.16547Error0.055758
PositivePositive_cloneT22B2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point1820
Multi_point794
4476
Pos_neg_data8505
Reference (20)
MethodGene