WormBase Tree Display for Gene: WBGene00006069
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| WBGene00006069 | SMap | S_parent | Sequence | C42D4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | str-1 | Person_evidence | WBPerson42 | |||||
| Sequence_name | C42D4.5 | ||||||||
| Molecular_name | C42D4.5 | ||||||||
| C42D4.5.1 | |||||||||
| CE38160 | |||||||||
| Other_name | CELE_C42D4.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | str-1 | ||||||||
| DB_info | Database | AceView | gene | 4H937 | |||||
| WormQTL | gene | WBGene00006069 | |||||||
| WormFlux | gene | WBGene00006069 | |||||||
| NDB | locus_tag | CELE_C42D4.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006069|UniProtKB=Q18570 | |||||||
| family | PTHR22943 | ||||||||
| NCBI | gene | 191967 | |||||||
| RefSeq | protein | NM_068729.2 | |||||||
| TrEMBL | UniProtAcc | Q18570 | |||||||
| UniProt_GCRP | UniProtAcc | Q18570 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | str | ||||||||
| Allele (11) | |||||||||
| Strain | WBStrain00005256 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00061684 | ||||||||
| 00061685 | |||||||||
| 00061686 | |||||||||
| 00061687 | |||||||||
| 00061688 | |||||||||
| 00061689 | |||||||||
| 00061690 | |||||||||
| 00061691 | |||||||||
| Ortholog (21) | |||||||||
| Paralog (267) | |||||||||
| Structured_description | Concise_description | str-1 encodes a seven transmembrane receptor; an STR-1::GFP reporter fusion is expressed in the AWB amphid chemosensory neurons where it localizes to the cilia; str-1 expression in AWB is positively regulated by kin-29. | Paper_evidence | WBPaper00002917 | |||||
| WBPaper00026818 | |||||||||
| WBPaper00028910 | |||||||||
| WBPaper00031882 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 03 Nov 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable G protein-coupled olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and olfactory behavior. Located in non-motile cilium. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C42D4.5 | |||||||
| Corresponding_CDS_history | C42D4.5:wp140 | ||||||||
| Corresponding_transcript | C42D4.5.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00011874 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042357 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr306 | ||||||||
| Expr8090 | |||||||||
| Expr11692 | |||||||||
| Expr1018387 | |||||||||
| Expr1146344 | |||||||||
| Expr2017025 | |||||||||
| Expr2035172 | |||||||||
| Marker85 | |||||||||
| Drives_construct (38) | |||||||||
| Construct_product | WBCnstr00011107 | ||||||||
| WBCnstr00013105 | |||||||||
| WBCnstr00022522 | |||||||||
| WBCnstr00034559 | |||||||||
| WBCnstr00038761 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (29) | |||||||||
| Interaction (156) | |||||||||
| Map_info | Map | IV | Position | 3.29165 | Error | 5.8e-05 | |||
| Positive | Positive_clone | C42D4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (35) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
