WormBase Tree Display for Gene: WBGene00006059
expand all nodes | collapse all nodes | view schema
| WBGene00006059 | SMap | S_parent | Sequence | F54C9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | stc-1 | |||||||
| Sequence_name | F54C9.2 | ||||||||
| Molecular_name | F54C9.2 | ||||||||
| F54C9.2.1 | |||||||||
| CE32895 | |||||||||
| Other_name | CELE_F54C9.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | stc-1 | ||||||||
| DB_info | Database | AceView | gene | 2I854 | |||||
| WormQTL | gene | WBGene00006059 | |||||||
| WormFlux | gene | WBGene00006059 | |||||||
| NDB | locus_tag | CELE_F54C9.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006059|UniProtKB=Q20752 | |||||||
| family | PTHR19375 | ||||||||
| NCBI | gene | 174368 | |||||||
| RefSeq | protein | NM_063407.6 | |||||||
| TREEFAM | TREEFAM_ID | TF105047 | |||||||
| TrEMBL | UniProtAcc | Q20752 | |||||||
| UniProt_GCRP | UniProtAcc | Q20752 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | stc | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00003191 | ||||||||
| WBStrain00037244 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00068998 | ||||||||
| 00068999 | |||||||||
| 00069000 | |||||||||
| 00069001 | |||||||||
| 00069002 | |||||||||
| 00069003 | |||||||||
| 00069004 | |||||||||
| 00105642 | |||||||||
| 00113932 | |||||||||
| 00113933 | |||||||||
| Contained_in_operon | CEOP2732 | ||||||||
| Ortholog (38) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Concise_description | stc-1 encodes an ATPase that is similar to the vertebrate HSPA13/STCH proteins that are members of the heat shock protein 70 family; by homology, STC-1 is predicted to function as an ER chaperone, and loss of stc-1 activity results in induction of an hsp-4::gfp transgene and increased aggregation of a heterologously expressed mutant human SOD1 protein in C. elegans neurons. | Paper_evidence | WBPaper00025202 | |||||
| WBPaper00034765 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 19 Jun 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP binding activity and ATP-dependent protein folding chaperone. Involved in IRE1-mediated unfolded protein response. Predicted to be located in endoplasmic reticulum. Is an ortholog of human HSPA13 (heat shock protein family A (Hsp70) member 13). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54C9.2 | |||||||
| Corresponding_CDS_history | F54C9.2:wp92 | ||||||||
| Corresponding_transcript | F54C9.2.1 | ||||||||
| Other_sequence (60) | |||||||||
| Associated_feature | WBsf650337 | ||||||||
| WBsf650338 | |||||||||
| WBsf223515 | |||||||||
| WBsf223516 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Chronogram85 | ||||||||
| Chronogram161 | |||||||||
| Expr6171 | |||||||||
| Expr1028129 | |||||||||
| Expr1032535 | |||||||||
| Expr1152072 | |||||||||
| Expr2016955 | |||||||||
| Expr2035103 | |||||||||
| Drives_construct | WBCnstr00002043 | ||||||||
| WBCnstr00003666 | |||||||||
| WBCnstr00034567 | |||||||||
| Construct_product | WBCnstr00016467 | ||||||||
| WBCnstr00034567 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction (41) | |||||||||
| Map_info | Map | II | Position | 0.816802 | Error | 0.000353 | |||
| Positive | Positive_clone | F54C9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006465 | ||||||||
| WBPaper00024340 | |||||||||
| WBPaper00025183 | |||||||||
| WBPaper00025202 | |||||||||
| WBPaper00034765 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043951 | |||||||||
| WBPaper00051015 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Otterson GA, Kaye FJ, Johnstone IL], [020809 krb] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
