WormBase Tree Display for Gene: WBGene00006057
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| WBGene00006057 | SMap | S_parent | Sequence | F47B8 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | CGC_name | sss-2 | Person_evidence | WBPerson680 | ||||||
| Sequence_name | F47B8.11 | |||||||||
| Molecular_name | F47B8.11 | |||||||||
| Other_name | CELE_F47B8.11 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | sss-2 | |||||||||
| DB_info | Database | AceView | gene | 5O827 | ||||||
| WormQTL | gene | WBGene00006057 | ||||||||
| WormFlux | gene | WBGene00006057 | ||||||||
| NDB | locus_tag | CELE_F47B8.11 | ||||||||
| NCBI | gene | 3565447 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 18 Sep 2014 13:18:32 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | sss | |||||||||
| Allele (18) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00025332 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| OMA | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00062421 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| WBGene00059846 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| WBGene00121923 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| WBGene00161572 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| WBGene00147005 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| Paralog | WBGene00006056 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | ||||||||||
| WBGene00017851 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| Structured_description | Automated_description | Enriched in germ line; intestine; and in male based on RNA-seq and microarray studies. Is affected by several genes including daf-2; dpy-10; and daf-12 based on microarray and RNA-seq studies. Is affected by thirty-one chemicals including hydrogen sulfide; Ethanol; and methylmercury hydroxide based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F47B8.11:wp245 | ||||||||
| Corresponding_pseudogene | F47B8.11 | |||||||||
| Associated_feature | WBsf232906 | |||||||||
| Experimental_info | Expr_pattern | Expr1017446 | ||||||||
| Expr1151455 | ||||||||||
| Microarray_results (14) | ||||||||||
| Expression_cluster (194) | ||||||||||
| Interaction (232) | ||||||||||
| Map_info | Map | V | Position | 6.23851 | Error | 0.000749 | ||||
| Positive | Positive_clone | F47B8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
