WormBase Tree Display for Gene: WBGene00005908
expand all nodes | collapse all nodes | view schema
| WBGene00005908 | SMap | S_parent | Sequence | CHROMOSOME_V | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | CGC_name | srx-17 | Person_evidence | WBPerson522 | ||||||
| Sequence_name | F55B12.8 | |||||||||
| Molecular_name | F55B12.8 | |||||||||
| F55B12.8.1 | ||||||||||
| CE52301 | ||||||||||
| Other_name | CELE_F55B12.8 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | srx-17 | |||||||||
| DB_info | Database | AceView | gene | 5O317 | ||||||
| WormFlux | gene | WBGene00005908 | ||||||||
| NDB | locus_tag | CELE_F55B12.8 | ||||||||
| Panther | gene | CAEEL|WormBase=WBGene00005908|UniProtKB=G5EF94 | ||||||||
| family | PTHR23017 | |||||||||
| NCBI | gene | 186284 | ||||||||
| RefSeq | protein | NM_001356749.3 | ||||||||
| TREEFAM | TREEFAM_ID | TF315574 | ||||||||
| TrEMBL | UniProtAcc | G5EF94 | ||||||||
| UniProt_GCRP | UniProtAcc | G5EF94 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 22 Nov 2007 15:14:44 | WBPerson4025 | Event | Changed_class | Pseudogene | CDS | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0001217 | ||||||||
| Gene_class | srx | |||||||||
| Allele (19) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| GO_annotation | 00017635 | |||||||||
| Ortholog (49) | ||||||||||
| Paralog (96) | ||||||||||
| Structured_description | Automated_description | Predicted to be located in membrane. Expressed in ASIL; ASIR; PVT; and ventral ganglion. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS | F55B12.8 | ||||||||
| Corresponding_CDS_history | F55B12.8:wp117 | |||||||||
| F55B12.8:wp261 | ||||||||||
| Corresponding_transcript | F55B12.8.1 | |||||||||
| Corresponding_pseudogene_history | F55B12.8:wp185 | |||||||||
| Associated_feature | WBsf1001897 | |||||||||
| WBsf1001898 | ||||||||||
| WBsf1001899 | ||||||||||
| WBsf1020765 | ||||||||||
| WBsf1020766 | ||||||||||
| WBsf1020767 | ||||||||||
| Experimental_info | RNAi_result | WBRNAi00015698 | Inferred_automatically | RNAi_primary | ||||||
| WBRNAi00048456 | Inferred_automatically | RNAi_primary | ||||||||
| Expr_pattern | Expr14181 | |||||||||
| Expr1152245 | ||||||||||
| Microarray_results | SMD_F55B12.8 | |||||||||
| 191372_at | ||||||||||
| A_12_P104001 | ||||||||||
| Aff_F55B12.8 | ||||||||||
| GPL19516_CGZ0024207 | ||||||||||
| GPL21109_F55B12.8 | ||||||||||
| Expression_cluster (18) | ||||||||||
| SAGE_tag | SAGE:acagacgcat | Strand | Antisense | |||||||
| SAGE:caaaatcaga | Strand | Antisense | ||||||||
| Map_info | Map | V | Position | 5.68679 | Error | 0.000551 | ||||
| Positive | Positive_clone | F55B12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
