WormBase Tree Display for Gene: WBGene00005604
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| WBGene00005604 | SMap | S_parent | Sequence | T06A1 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | CGC_name | srj-16 | Person_evidence | WBPerson522 | ||||||
| Sequence_name | T06A1.2 | |||||||||
| Molecular_name | T06A1.2 | |||||||||
| Other_name | CELE_T06A1.2 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | srj-16 | |||||||||
| DB_info | Database | AceView | gene | 5C432 | ||||||
| WormQTL | gene | WBGene00005604 | ||||||||
| WormFlux | gene | WBGene00005604 | ||||||||
| NDB | locus_tag | CELE_T06A1.2 | ||||||||
| NCBI | gene | 191937 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 21 Sep 2017 13:43:35 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | srj | |||||||||
| Allele (49) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00058107 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| TreeFam | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00144410 | Caenorhabditis brenneri | From_analysis | OMA | |||||||
| TreeFam | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00145855 | Caenorhabditis brenneri | From_analysis | OMA | |||||||
| TreeFam | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00095134 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00116422 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00095132 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00110721 | Pristionchus pacificus | From_analysis | OMA | |||||||
| Paralog (39) | ||||||||||
| Structured_description | Automated_description | Enriched in GABAergic neurons and sensory neurons based on tiling array and RNA-seq studies. Is affected by rsr-2; clk-1; and tdp-1 based on tiling array and microarray studies. Is affected by four chemicals including dibromoacetic acid; tetrabromobisphenol A; and Microcystin-LR based on microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | T06A1.2:wp126 | ||||||||
| T06A1.2:wp140 | ||||||||||
| T06A1.2:wp261 | ||||||||||
| Corresponding_pseudogene | T06A1.2 | |||||||||
| Experimental_info | Expr_pattern | Expr1012858 | ||||||||
| Expr1156210 | ||||||||||
| Drives_construct | WBCnstr00034853 | |||||||||
| Construct_product | WBCnstr00034853 | |||||||||
| Microarray_results (12) | ||||||||||
| Expression_cluster (20) | ||||||||||
| Interaction (27) | ||||||||||
| Map_info | Map | V | Position | -16.7068 | Error | 0.008521 | ||||
| Positive | Positive_clone | T06A1 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
