WormBase Tree Display for Gene: WBGene00005079
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| WBGene00005079 | Evidence | Person_evidence | WBPerson522 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F33H1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | srd-1 | Person_evidence | WBPerson522 | |||||
| Sequence_name | F33H1.5 | ||||||||
| Molecular_name | F33H1.5 | ||||||||
| F33H1.5.1 | |||||||||
| CE02207 | |||||||||
| Other_name | CELE_F33H1.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | srd-1 | ||||||||
| DB_info | Database | AceView | gene | 2K470 | |||||
| WormQTL | gene | WBGene00005079 | |||||||
| WormFlux | gene | WBGene00005079 | |||||||
| NDB | locus_tag | CELE_F33H1.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005079|UniProtKB=Q19992 | |||||||
| family | PTHR22945 | ||||||||
| NCBI | gene | 191794 | |||||||
| RefSeq | protein | NM_063794.1 | |||||||
| SwissProt | UniProtAcc | Q19992 | |||||||
| TREEFAM | TREEFAM_ID | TF316515 | |||||||
| UniProt_GCRP | UniProtAcc | Q19992 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srd | ||||||||
| Allele (41) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes predicted serpentine receptor.48% identity to linked gene srd-2. srd-1:GFP expressed in sensory neuron ASI;also, only in male, sensory neuron ADF, male tail neurons (R8/R9?). [Troemel et al. 1995; CX] | ||||||||
| Strain | WBStrain00005250 | ||||||||
| WBStrain00004644 | |||||||||
| WBStrain00051581 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00066624 | ||||||||
| 00066625 | |||||||||
| Ortholog (31) | |||||||||
| Paralog (68) | |||||||||
| Structured_description | Concise_description | srd-1 encodes a seven transmembrane chemosensory receptor; SRD-1 is expressed in the ASI chemosensory neurons; SRD-1 expression in ASI is repressed in the presence of dauer pheromone at concentrations lower than that which induces dauer formation. | Paper_evidence | WBPaper00004878 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Apr 2005 00:00:00 | ||||||||
| Automated_description | Predicted to be located in membrane. Expressed in AWAL and AWAR. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F33H1.5 | |||||||
| Corresponding_transcript | F33H1.5.1 | ||||||||
| Associated_feature | WBsf989275 | ||||||||
| WBsf989276 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014259 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046230 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063714 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031729 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046231 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr302 | ||||||||
| Expr1721 | |||||||||
| Expr14658 | |||||||||
| Expr14659 | |||||||||
| Expr1028927 | |||||||||
| Expr1150118 | |||||||||
| Expr2016229 | |||||||||
| Expr2034461 | |||||||||
| Drives_construct | WBCnstr00000825 | ||||||||
| WBCnstr00010414 | |||||||||
| WBCnstr00011078 | |||||||||
| WBCnstr00035214 | |||||||||
| WBCnstr00041210 | |||||||||
| WBCnstr00041211 | |||||||||
| Construct_product | WBCnstr00011078 | ||||||||
| WBCnstr00035214 | |||||||||
| WBCnstr00041211 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (36) | |||||||||
| Interaction (79) | |||||||||
| Map_info | Map | II | Position | 2.18264 | Error | 0.008988 | |||
| Positive | Positive_clone | F33H1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4697 | |||||||
| 4698 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002314 | ||||||||
| WBPaper00003063 | |||||||||
| WBPaper00003083 | |||||||||
| WBPaper00004324 | |||||||||
| WBPaper00004489 | |||||||||
| WBPaper00004878 | |||||||||
| WBPaper00005612 | |||||||||
| WBPaper00006103 | |||||||||
| WBPaper00006325 | |||||||||
| WBPaper00006397 | |||||||||
| WBPaper00011066 | |||||||||
| WBPaper00011633 | |||||||||
| WBPaper00012448 | |||||||||
| WBPaper00013489 | |||||||||
| WBPaper00015292 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00019253 | |||||||||
| WBPaper00023001 | |||||||||
| WBPaper00025440 | |||||||||
| WBPaper00029015 | |||||||||
| WBPaper00032196 | |||||||||
| WBPaper00043471 | |||||||||
| WBPaper00047891 | |||||||||
| WBPaper00052258 | |||||||||
| WBPaper00052613 | |||||||||
| WBPaper00053368 | |||||||||
| WBPaper00056274 | |||||||||
| WBPaper00062465 | |||||||||
| WBPaper00065565 | |||||||||
| WBPaper00065859 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
