Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00005022

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00005022SMapS_parentSequenceF29F11
IdentityVersion1
NameCGC_namesqv-4Person_evidenceWBPerson268
Sequence_nameF29F11.1
Molecular_nameF29F11.1
F29F11.1.1
CE05767
Other_nameCELE_F29F11.1Accession_evidenceNDBBX284605
Public_namesqv-4
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:37WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsqv
Allele (28)
Legacy_information[Herman T] sqv for squashed vulva. morphology of L4 vulva abnormal (invagination considerably reduced). hermaphrodites self-sterile
[C.elegansII] n2840 : morphology of L4 vulva abnormal (invagination considerably reduced); hermaphrodites self-sterile OA1: n2827. [MT]
Complementation_data[Herman T] complements spe-10(hc104ts)
StrainWBStrain00027355
RNASeq_FPKM (74)
GO_annotation (20)
OrthologWBGene00065019Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00031223Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00146289Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00136059Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00190956Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00104188Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00223956Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10386Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5712Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g5714Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g15965Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8263Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g13383Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g22983Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9262Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g22103Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26252Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g27448Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9217Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1520Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00265.g8135Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g7136Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g19398Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15538Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00391.g10621Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11815Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016462Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12065Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g15849Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g8785Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50298000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15579Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00238318Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00256188Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00261974Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294880Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0261445Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-011022-1Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:12525Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1306785Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:621879Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptionsqv-4 encodes a UDP-glucose 6-dehydrogenase, biochemically active in vitro, that is required for cytokinesis of one-cell embryos and for vulval morphogenesis; SQV-4 is orthologous to Drosophila SUGARLESS, human UGDH (OMIM:603370), and zebrafish JEKYLL; SQV-4 is expressed in many cell types, notably oocytes and uterine, seam, pharyngeal, and spermathecal cells, with expression being prominent in 14 of the 22 vulval nuclei of late L4 larvae; the common requirement for SQV-4 in both cytokinesis and morphogenesis may be to promote filling an extracellular space with hygroscopic proteoglycans (either in the eggshell, or underneath the L4 cuticle), which in turn may cause the space to fill with fluid.Paper_evidenceWBPaper00005541
WBPaper00012891
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables UDP-glucose 6-dehydrogenase activity and identical protein binding activity. Involved in several processes, including egg-laying behavior; glycosaminoglycan biosynthetic process; and vulval development. Located in cytoplasm. Expressed in several structures, including germ line; hermaphrodite gonad; hypodermis; oocyte; and vulva. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 84. Is an ortholog of human UGDH (UDP-glucose 6-dehydrogenase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0112219Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:12525)
Molecular_infoCorresponding_CDSF29F11.1
Corresponding_transcriptF29F11.1.1
Other_sequence (45)
Associated_featureWBsf653019
WBsf669320
WBsf977266
WBsf977267
WBsf977268
WBsf1001159
WBsf1020330
WBsf234425
Experimental_infoRNAi_resultWBRNAi00085637Inferred_automaticallyRNAi_primary
WBRNAi00031580Inferred_automaticallyRNAi_primary
WBRNAi00008724Inferred_automaticallyRNAi_primary
WBRNAi00045929Inferred_automaticallyRNAi_primary
WBRNAi00025315Inferred_automaticallyRNAi_primary
Expr_patternExpr2291
Expr2292
Expr3229
Expr4150
Expr1018017
Expr1032505
Expr1149829
Expr2016122
Expr2034357
Drives_constructWBCnstr00010754
Construct_productWBCnstr00010754
AntibodyWBAntibody00000568
Microarray_results (23)
Expression_cluster (188)
Interaction (114)
Map_infoMapVPosition2.7064Error0.002471
PositivePositive_cloneF29F11Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point3141
3142
4882
Reference (23)
MethodGene