WormBase Tree Display for Gene: WBGene00005002
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| WBGene00005002 | Evidence | Author_evidence | Patthy L | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Hodgkin JA | |||||||||
| SMap | S_parent | Sequence | C54G6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | spp-17 | |||||||
| Sequence_name | C54G6.5 | ||||||||
| Molecular_name | C54G6.5 | ||||||||
| C54G6.5.1 | |||||||||
| CE30269 | |||||||||
| Other_name | C54G6.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_C54G6.5 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | spp-17 | ||||||||
| DB_info | Database | AceView | gene | 1B491 | |||||
| WormQTL | gene | WBGene00005002 | |||||||
| WormFlux | gene | WBGene00005002 | |||||||
| NDB | locus_tag | CELE_C54G6.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005002|UniProtKB=Q8WSN3 | |||||||
| family | PTHR21579 | ||||||||
| NCBI | gene | 171681 | |||||||
| RefSeq | protein | NM_170795.8 | |||||||
| TREEFAM | TREEFAM_ID | TF343148 | |||||||
| TrEMBL | UniProtAcc | Q8WSN3 | |||||||
| UniProt_GCRP | UniProtAcc | Q8WSN3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spp | ||||||||
| Allele (14) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP1788 | ||||||||
| Ortholog (24) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Automated_description | Enriched in DA neuron; VA neuron; intestine; and pharyngeal muscle cell based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and dpy-10 based on microarray; RNA-seq; tiling array; and proteomic studies. Is affected by twenty-five chemicals including D-glucose; Psoralens; and allantoin based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: Saposin B type domain and Saposin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C54G6.5 | |||||||
| Corresponding_transcript | C54G6.5.1 | ||||||||
| Other_sequence | CJC04076_1 | ||||||||
| Associated_feature | WBsf217174 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00094857 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004581 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030163 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043188 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017448 | ||||||||
| Expr1147166 | |||||||||
| Expr2016072 | |||||||||
| Expr2034308 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (290) | |||||||||
| Interaction | WBInteraction000521056 | ||||||||
| WBInteraction000524321 | |||||||||
| WBInteraction000548220 | |||||||||
| Map_info | Map | I | Position | -17.4035 | Error | 0.002255 | |||
| Positive | Positive_clone | C54G6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024209 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
