WormBase Tree Display for Gene: WBGene00004979
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| WBGene00004979 | SMap | S_parent | Sequence | F42G8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sph-1 | Person_evidence | WBPerson451 | |||||
| Sequence_name | F42G8.11 | ||||||||
| Molecular_name | F42G8.11 | ||||||||
| F42G8.11.1 | |||||||||
| CE40059 | |||||||||
| Other_name | CELE_F42G8.11 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | sph-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sph | ||||||||
| Allele (23) | |||||||||
| Strain | WBStrain00031923 | ||||||||
| WBStrain00036200 | |||||||||
| WBStrain00003813 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00032640 | ||||||||
| 00032641 | |||||||||
| 00032642 | |||||||||
| 00032643 | |||||||||
| 00032644 | |||||||||
| 00113388 | |||||||||
| 00113389 | |||||||||
| Ortholog (43) | |||||||||
| Structured_description | Concise_description | sph-1 encodes a member of the synaptophysin/synaptoporin family that contains a MARVEL domain, a membrane-associating domain found in lipid-associating proteins, and contains a transmembrane domain. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Located in cytoplasmic vesicle. Expressed in anal sphincter muscle and pharyngeal muscle cell. Human ortholog(s) of this gene implicated in Alzheimer's disease and non-syndromic X-linked intellectual disability 96. Is an ortholog of human SYNPR (synaptoporin) and SYPL1 (synaptophysin like 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11506) | ||||
| DOID:0112035 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11506) | ||||||
| Molecular_info | Corresponding_CDS | F42G8.11 | |||||||
| Corresponding_CDS_history | F42G8.11:wp156 | ||||||||
| Corresponding_transcript | F42G8.11.1 | ||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf651983 | ||||||||
| WBsf651984 | |||||||||
| WBsf668084 | |||||||||
| WBsf230386 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00047123 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014841 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032152 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3982 | ||||||||
| Expr1020981 | |||||||||
| Expr1032477 | |||||||||
| Expr1150991 | |||||||||
| Expr2016054 | |||||||||
| Expr2034289 | |||||||||
| Drives_construct | WBCnstr00011795 | ||||||||
| WBCnstr00035295 | |||||||||
| Construct_product | WBCnstr00035295 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction | WBInteraction000120132 | ||||||||
| WBInteraction000122897 | |||||||||
| WBInteraction000122898 | |||||||||
| WBInteraction000134602 | |||||||||
| WBInteraction000166894 | |||||||||
| WBInteraction000180665 | |||||||||
| WBInteraction000193904 | |||||||||
| WBInteraction000428878 | |||||||||
| WBInteraction000444399 | |||||||||
| Map_info | Map | IV | Position | 3.61293 | Error | 0.001689 | |||
| Positive | Positive_clone | F42G8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4986 | |||||||
| 4448 | |||||||||
| 5613 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027627 | ||||||||
| WBPaper00028886 | |||||||||
| WBPaper00031849 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
