WormBase Tree Display for Gene: WBGene00004898
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| WBGene00004898 | Evidence | Accession_evidence | EMBL | AF239889 | |||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F23H12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | snb-2 | |||||||
| Sequence_name | F23H12.1 | ||||||||
| Molecular_name | F23H12.1 | ||||||||
| F23H12.1.1 | |||||||||
| CE42855 | |||||||||
| Other_name | CELE_F23H12.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | snb-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snb | ||||||||
| Allele (34) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00065794 | ||||||||
| 00065795 | |||||||||
| 00065796 | |||||||||
| 00065797 | |||||||||
| 00065798 | |||||||||
| 00065799 | |||||||||
| 00113306 | |||||||||
| 00113307 | |||||||||
| Contained_in_operon | CEOP5518 | ||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00004897 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022077 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004899 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007200 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00014084 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015164 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018853 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00044062 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in vesicle fusion. Predicted to be located in plasma membrane. Predicted to be part of SNARE complex. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome and spastic ataxia 1. Is an ortholog of human VAMP1 (vesicle associated membrane protein 1) and VAMP3 (vesicle associated membrane protein 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050772 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12642) | ||||
| DOID:3635 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12642) | ||||||
| Molecular_info | Corresponding_CDS | F23H12.1 | |||||||
| Corresponding_CDS_history | F23H12.1:wp51 | ||||||||
| F23H12.1:wp193 | |||||||||
| Corresponding_transcript | F23H12.1.1 | ||||||||
| Other_sequence | AF239889 | ||||||||
| Associated_feature | WBsf234667 | ||||||||
| WBsf234668 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00091335 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00065642 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031339 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045449 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013836 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045450 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015814 | ||||||||
| Expr1149368 | |||||||||
| Expr2015940 | |||||||||
| Expr2034173 | |||||||||
| Drives_construct | WBCnstr00035336 | ||||||||
| Construct_product | WBCnstr00035336 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Map | V | Position | 4.0055 | Error | 0.001281 | |||
| Positive | Positive_clone | F23H12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
