WormBase Tree Display for Gene: WBGene00004887
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| WBGene00004887 | SMap | S_parent | Sequence | C41G7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | smn-1 | Person_evidence | WBPerson651 | |||||
| Sequence_name | C41G7.1 | ||||||||
| Molecular_name | C41G7.1a | ||||||||
| C41G7.1a.1 | |||||||||
| CE08665 | |||||||||
| C41G7.1b | |||||||||
| CE27843 | |||||||||
| C41G7.1a.2 | |||||||||
| C41G7.1b.1 | |||||||||
| Other_name | SMN | Accession_evidence | EMBL | AF156887 | |||||
| CELE_C41G7.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | smn-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smn | ||||||||
| Allele (16) | |||||||||
| Strain | WBStrain00024206 | ||||||||
| WBStrain00024207 | |||||||||
| WBStrain00008302 | |||||||||
| WBStrain00047286 | |||||||||
| Component_of_genotype (15) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00004891 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | smn-1 encodes a homolog of human SMN, which when mutated leads to spinal muscular atrophy (OMIM:253300). | Paper_evidence | WBPaper00004103 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables protein self-association. Involved in several processes, including determination of adult lifespan; pharyngeal pumping; and vulval development. Located in nucleus. Expressed in several structures, including body wall musculature; excretory cell; hypodermis; intestine; and vulval muscle. Used to study spinal muscular atrophy. Human ortholog(s) of this gene implicated in spinal muscular atrophy (multiple). Is an ortholog of human SMN1 (survival of motor neuron 1, telomeric) and SMN2 (survival of motor neuron 2, centromeric). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info (3) | |||||||||
| Models_disease_asserted (17) | |||||||||
| Molecular_info | Corresponding_CDS | C41G7.1a | |||||||
| C41G7.1b | |||||||||
| Corresponding_transcript | C41G7.1a.1 | ||||||||
| C41G7.1a.2 | |||||||||
| C41G7.1b.1 | |||||||||
| Other_sequence (49) | |||||||||
| Associated_feature | WBsf649480 | ||||||||
| WBsf220093 | |||||||||
| WBsf220094 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr1229 | ||||||||
| Expr1230 | |||||||||
| Expr1231 | |||||||||
| Expr12328 | |||||||||
| Expr13407 | |||||||||
| Expr1018011 | |||||||||
| Expr1032426 | |||||||||
| Expr1146303 | |||||||||
| Expr2015920 | |||||||||
| Expr2034153 | |||||||||
| Drives_construct | WBCnstr00010166 | ||||||||
| WBCnstr00023121 | |||||||||
| WBCnstr00035340 | |||||||||
| Construct_product | WBCnstr00010166 | ||||||||
| WBCnstr00020789 | |||||||||
| WBCnstr00022986 | |||||||||
| WBCnstr00023121 | |||||||||
| WBCnstr00035340 | |||||||||
| WBCnstr00039444 | |||||||||
| Regulate_expr_cluster | WBPaper00056809:smn-1(ok355)_downregulated | ||||||||
| WBPaper00056809:smn-1(ok355)_upregulated | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction (93) | |||||||||
| WBProcess | WBbiopr:00000001 | ||||||||
| Map_info | Map | I | Position | 3.78179 | Error | 0.001059 | |||
| Positive | Positive_clone | C41G7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4667 | |||||||
| 4707 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (69) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
