WormBase Tree Display for Gene: WBGene00004882
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| WBGene00004882 | SMap | S_parent | Sequence | F46B6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | smg-4 | Person_evidence | WBPerson261 | |||||
| Sequence_name | F46B6.3 | ||||||||
| Molecular_name | F46B6.3a | ||||||||
| F46B6.3a.1 | |||||||||
| CE26973 | |||||||||
| F46B6.3b | |||||||||
| CE30440 | |||||||||
| F46B6.3b.1 | |||||||||
| Other_name | mab-14 | ||||||||
| CELE_F46B6.3 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | smg-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smg | ||||||||
| Reference_allele | WBVar00088765 | ||||||||
| Allele (31) | |||||||||
| Legacy_information | See also ma116 | ||||||||
| [C.elegansII] ma116 : adult male has swollen bursa, adult hermaphrodite has protruding vulva. ME1. Recessive suppressor of unc-54(r293),tra-2(e1209), etc.; suppression reduced bymaternal rescue. unc-54 nonsense RNAs accumulate. OA3: r1181, e2615psu, e2616psu. Cloned: YAC and phage rescue. [Hodgkin et al. 1989; Pulak and Anderson 1993; CB; TR] | |||||||||
| Strain | WBStrain00034951 | ||||||||
| WBStrain00004551 | |||||||||
| WBStrain00004567 | |||||||||
| WBStrain00051118 | |||||||||
| WBStrain00055592 | |||||||||
| WBStrain00055594 | |||||||||
| WBStrain00055593 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP5236 | ||||||||
| Ortholog (30) | |||||||||
| Structured_description | Automated_description | Predicted to enable mRNA binding activity. Involved in male genitalia development; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and obsolete hermaphrodite genitalia development. Located in nucleus and perinuclear region of cytoplasm. Expressed in intestinal cell; muscle cell; and neurons. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability 14. Is an ortholog of human UPF3A (UPF3A regulator of nonsense mediated mRNA decay) and UPF3B (UPF3B regulator of nonsense mediated mRNA decay). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060821 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20439) | ||||
| Molecular_info | Corresponding_CDS | F46B6.3a | |||||||
| F46B6.3b | |||||||||
| Corresponding_CDS_history | F46B6.3:wp46 | ||||||||
| F46B6.3:wp69 | |||||||||
| F46B6.3b:wp76 | |||||||||
| Corresponding_transcript | F46B6.3a.1 | ||||||||
| F46B6.3b.1 | |||||||||
| Other_sequence | CBC05396_1 | ||||||||
| Associated_feature | WBsf234278 | ||||||||
| WBsf234279 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00094500 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00008069 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047495 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085061 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094403 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015065 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047493 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094395 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr110 | ||||||||
| Expr1337 | |||||||||
| Expr1022685 | |||||||||
| Expr1032421 | |||||||||
| Expr1151332 | |||||||||
| Expr2015910 | |||||||||
| Expr2034143 | |||||||||
| Drives_construct | WBCnstr00010227 | ||||||||
| WBCnstr00035343 | |||||||||
| Construct_product | WBCnstr00035343 | ||||||||
| Antibody | WBAntibody00001272 | ||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction (50) | |||||||||
| Map_info | Map | V | Position | 2.19411 | Error | 0.006525 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | eDf1 | |||||||
| Positive_clone | F46B6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | 2_point | 3387 | |||||||
| Multi_point | 1192 | ||||||||
| 3101 | |||||||||
| 3102 | |||||||||
| 5376 | |||||||||
| Pos_neg_data | 4574 | ||||||||
| 4575 | |||||||||
| Reference (38) | |||||||||
| Method | Gene |
