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WormBase Tree Display for Gene: WBGene00004880

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Name Class

WBGene00004880SMapS_parentSequenceY48G8AL
IdentityVersion1
NameCGC_namesmg-2Person_evidenceWBPerson261
Sequence_nameY48G8AL.6
Molecular_nameY48G8AL.6
Y48G8AL.6.1
CE28367
Other_namemab-11
Y48G8A_3304.aCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y48G8AL.6Accession_evidenceNDBBX284601
Public_namesmg-2
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_info (12)
Molecular_infoCorresponding_CDSY48G8AL.6
Corresponding_transcriptY48G8AL.6.1
Other_sequence (48)
Associated_featureWBsf217194
WBsf217195
Experimental_infoRNAi_result (15)
Expr_patternExpr7011
Expr7979
Expr13326
Expr1018867
Expr1032419
Expr1160418
Expr2015908
Expr2034141
Drives_constructWBCnstr00003234
Regulate_expr_clusterWBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
AntibodyWBAntibody00000979
Microarray_results (20)
Expression_clusterWBPaper00032031:DConiospora_upregulated_cDNA_12h
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048910:mRNA-interacting_protein
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050344:ASER-neuron_enriched
WBPaper00050412:cco-1(RNAi)_upregulated_N2
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051352:Long-Term-Association-Memory_downregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:alovudine_24h_regulated
WBPaper00053615:SMO-1_target
WBPaper00053713:Pheromone-induced_postdauer_vs_control_upregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00053814:25C_downregulated_PY79
WBPaper00055013:HMG-3_interacting_protein
WBPaper00055226:ADR-2_target_N2
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055648:germline_expressed
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_downregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059605:MUT-16_interacting
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061341:28C_24h_downregulated
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:mtr-4_1623-W03F9.10_103
WBPaper00062123:GLH-1_interacting
WBPaper00064055:trl-1(cas1077)_upregulated_non-starved
WBPaper00064055:trl-1(cas1077)_upregulated_starved
WBPaper00064071:NHR-49_interacting
WBPaper00064080:let-7_miRNA_interacting
WBPaper00064080:miR-58_miRNA_interacting
WBPaper00064163:ZNFX-1_interacting_embryo
WBPaper00064315:mes-4(bn73)_downregulated_EGCs
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F1
WBPaper00065120:body-muscle-transcriptome
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_Ref
WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00065995:M.humicola-extract_downregulated_old-1(ok1273)
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00029437:dcr-1_downregulated
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00035905:FBF-1_Associated
WBPaper00040821:Au-NP_regulated
WBPaper00041174:environmental
WBPaper00041174:genotypic
WBPaper00041174:genotypic_and_environmental
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045960:L1-L4-lethargus_downregulated
WBPaper00045960:L4-lethargus_downregulated
WBPaper00053236:Starvation_regulated_N2
Interaction (108)
Map_infoMapIPosition-16.9122Error0.119036
Well_ordered
PositivePositive_cloneY48G8A
Y48G8ALInferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point2503
2504
Multi_point979
5345
Landmark_gene
Reference (85)
MethodGene