WormBase Tree Display for Gene: WBGene00004856

WBGene00004856 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 1
    Name: CGC_name: sma-2 Person_evidence: WBPerson261
      Sequence_name: ZK370.2
      Molecular_name: ZK370.2a
        ZK370.2a.1
        CE33015
        ZK370.2b
        CE53267
        ZK370.2a.2
        ZK370.2b.1
      Other_name: cem-1
        CELE_ZK370.2 Accession_evidence: NDB BX284603
      Public_name: sma-2
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (11)
  Disease_info: Potential_model (16)
  Molecular_info: Corresponding_CDS: ZK370.2a
      ZK370.2b
    Corresponding_CDS_history: ZK370.2:wp91
    Corresponding_transcript: ZK370.2a.1
      ZK370.2a.2
      ZK370.2b.1
    Other_sequence (74)
    Associated_feature (11)
    Transcription_factor: WBTranscriptionFactor001120
  Experimental_info: RNAi_result (12)
    Expr_pattern: Chronogram1005
      Expr7207
      Expr1011006
      Expr1032408
      Expr1162804
      Expr2015892
      Expr2034125
    Drives_construct: WBCnstr00001867
      WBCnstr00001868
      WBCnstr00001869
      WBCnstr00003254
      WBCnstr00035354
    Construct_product: WBCnstr00001867
      WBCnstr00001868
      WBCnstr00001869
      WBCnstr00035354
      WBCnstr00038798
    Regulate_expr_cluster: WBPaper00037682:sma-2_downregulated
      WBPaper00037682:sma-2_sma-4_downregulated
      WBPaper00037682:sma-2_sma-4_upregulated
      WBPaper00037682:sma-2_upregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-2(rax5)_upregulated
    Microarray_results (22)
    Expression_cluster: WBPaper00029359_1166
      WBPaper00029359_1197
      WBPaper00029359_1291
      WBPaper00029359_1311
      WBPaper00029359_1320
      WBPaper00029359_1326
      WBPaper00029359_1345
      WBPaper00029359_1357
      WBPaper00029359_1435
      WBPaper00029359_1439
      WBPaper00029359_1458
      WBPaper00029359_1546
      WBPaper00029359_1549
      WBPaper00029359_1557
      WBPaper00029359_1599
      WBPaper00029359_1618
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037946:MAB-5_interacting
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00046338:intestine_unique
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:intestine_enriched
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059471:EGL-43_interacting
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061007:X.citri_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:ADEsh
      WBPaper00061340:AIM
      WBPaper00061340:AMso
      WBPaper00061340:Z1_Z4
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:nhr-18-C34D1.4_6256
      WBPaper00061527:T16H12.9-kin-9_20752
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064716:paraquat_downregulated
      WBPaper00064871:hypoxia_downregulated_F2
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065841:78_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_5
      cgc4489_group_21
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00032948:StarveUp2
      WBPaper00034661:AgNPs_downregulated
      WBPaper00036286:Pattern_I
      WBPaper00040821:Au-NP_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040963:Q200_up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041939:control_vs_EtBr-exposed_3h
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048637:lin-35(n745)_starvation_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc6390]:Cluster_A
    Interaction (247)
    WBProcess: WBbiopr:00000025
      WBbiopr:00000039
  Map_info: Map: III Position: -0.072089 Error: 0.00314
    Well_ordered
    Positive: Positive_clone: PAR2
        ZK370 Author_evidence: Savage C
          Inferred_automatically: From sequence, transcript, pseudogene data
    Negative: Outside_rearr: tnDf2
    Mapping_data: 2_point (17)
      Multi_point (43)
      Pos_neg_data: 360
        801
        817
        6103
        6104
        6106
        2718
        5142
        9450
        10534
  Reference (168)
  Picture: WBPicture0000013077
  Remark: [Savage C] sma-2 cDNA spans ZK370 and pAR2, and includes most of the Genefinder predicted ORF ZK370.2
    cem-1 appears to be the same gene as this. The two sequences PAR2.2 and ZK370.2 come from cem-1 and the positive clones. sdm 12/00
    this gene crosses stl and cam boundary, hence predicted in 2 parts. sdm 01.01
  Method: Gene