WormBase Tree Display for Gene: WBGene00004809
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WBGene00004809 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F44G3 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | skr-3 | Person_evidence | WBPerson322 | |||||
Sequence_name | F44G3.6 | ||||||||
Molecular_name | F44G3.6 | ||||||||
F44G3.6.1 | |||||||||
CE16037 | |||||||||
F44G3.6.2 | |||||||||
Other_name | CELE_F44G3.6 | Accession_evidence | NDB | BX284605 | |||||
Public_name | skr-3 | ||||||||
DB_info | Database | AceView | gene | 5Q603 | |||||
WormQTL | gene | WBGene00004809 | |||||||
WormFlux | gene | WBGene00004809 | |||||||
NDB | locus_tag | CELE_F44G3.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004809|UniProtKB=G5EE67 | |||||||
family | PTHR11165 | ||||||||
NCBI | gene | 180081 | |||||||
RefSeq | protein | NM_074658.7 | |||||||
TREEFAM | TREEFAM_ID | TF354233 | |||||||
TrEMBL | UniProtAcc | G5EE67 | |||||||
UniProt_GCRP | UniProtAcc | G5EE67 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | skr | ||||||||
Allele (41) | |||||||||
Strain | WBStrain00031385 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00015495 | ||||||||
00015496 | |||||||||
00015497 | |||||||||
00015498 | |||||||||
00015499 | |||||||||
00015500 | |||||||||
00015501 | |||||||||
00015502 | |||||||||
00113216 | |||||||||
Ortholog (60) | |||||||||
Paralog (19) | |||||||||
Structured_description | Concise_description | skr-3 encodes a homolog of Skp1 in S. cerevisiae; skr-3 transcripts are upregulated in response to pathogenic bacteria, and skr-3(RNAi) results in enhanced susceptibility to infection. | Paper_evidence | WBPaper00005128 | |||||
WBPaper00005129 | |||||||||
WBPaper00028482 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 12 Mar 2014 00:00:00 | ||||||||
Automated_description | Predicted to enable cullin family protein binding activity. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in cytoplasm and nucleus. Expressed in intestine and pharynx. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F44G3.6 | |||||||
Corresponding_transcript | F44G3.6.1 | ||||||||
F44G3.6.2 | |||||||||
Other_sequence | AF440507 | ||||||||
Associated_feature | WBsf1002400 | ||||||||
WBsf1021100 | |||||||||
WBsf233078 | |||||||||
WBsf233079 | |||||||||
Experimental_info | RNAi_result (23) | ||||||||
Expr_pattern | Expr2439 | ||||||||
Expr1027783 | |||||||||
Expr1032388 | |||||||||
Expr1151186 | |||||||||
Expr2015851 | |||||||||
Expr2034084 | |||||||||
Drives_construct | WBCnstr00010829 | ||||||||
WBCnstr00035373 | |||||||||
Construct_product | WBCnstr00010829 | ||||||||
WBCnstr00035373 | |||||||||
Microarray_results | SMD_F44G3.6 | ||||||||
187985_at | |||||||||
A_12_P119398 | |||||||||
Aff_F44G3.6 | |||||||||
GPL14144_F44G3.6_370-429_0.970_1_A | |||||||||
GPL19516_CGZ0021742 | |||||||||
GPL19516_CGZ0021743 | |||||||||
GPL21109_F44G3.6.1 | |||||||||
GPL3518_CE16037 | |||||||||
GPL8304_CE_WBGene00004809_A | |||||||||
GPL8304_CE_WBGene00004809_B | |||||||||
GPL8673_F44G3_6P00062 | |||||||||
GPL8673_F44G3_6P00071 | |||||||||
GPL8673_F44G3_6P00144 | |||||||||
GPL9450_F44G3.6 | |||||||||
cea2.d.26114 | |||||||||
cea2.d.26119 | |||||||||
Expression_cluster (266) | |||||||||
Interaction (42) | |||||||||
Map_info | Map | V | Position | 9.60545 | Error | 0.031822 | |||
Positive | Positive_clone | F44G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4529 | |||||||
4662 | |||||||||
5313 | |||||||||
Pseudo_map_position | |||||||||
Reference (14) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |