WormBase Tree Display for Gene: WBGene00004807
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WBGene00004807 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_I | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | skr-1 | Person_evidence | WBPerson322 | |||||
Sequence_name | F46A9.5 | ||||||||
Molecular_name | F46A9.5 | ||||||||
F46A9.5.1 | |||||||||
CE10580 | |||||||||
Other_name | CELE_F46A9.5 | Accession_evidence | NDB | BX284601 | |||||
Public_name | skr-1 | ||||||||
DB_info | Database | AceView | gene | 1K49 | |||||
WormQTL | gene | WBGene00004807 | |||||||
WormFlux | gene | WBGene00004807 | |||||||
NDB | locus_tag | CELE_F46A9.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004807|UniProtKB=G5ECU1 | |||||||
family | PTHR11165 | ||||||||
NCBI | gene | 172775 | |||||||
RefSeq | protein | NM_060112.8 | |||||||
SwissProt | UniProtAcc | G5ECU1 | |||||||
TREEFAM | TREEFAM_ID | TF354233 | |||||||
UniProt_GCRP | UniProtAcc | G5ECU1 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | skr | ||||||||
Allele (14) | |||||||||
Strain | WBStrain00036440 | ||||||||
WBStrain00005195 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (32) | |||||||||
Ortholog (44) | |||||||||
Paralog (19) | |||||||||
Structured_description | Concise_description | The skr-1 gene encodes a homolog of Skp1 in S. cerevisiae that is required for the restraint of cell proliferation, progression through the pachytene stage of meiosis, and the formation of bivalent chromosomes at diakinesis. | Paper_evidence (2) | ||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable cullin family protein binding activity. Involved in several processes, including negative regulation of intracellular signal transduction; regulation of cellular component organization; and regulation of protein stability. Predicted to be located in cytoplasm and nucleus. Expressed in several structures, including pharynx and spermatheca. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F46A9.5 | |||||||
Corresponding_transcript | F46A9.5.1 | ||||||||
Other_sequence (144) | |||||||||
Associated_feature | WBsf643588 | ||||||||
WBsf643589 | |||||||||
WBsf656751 | |||||||||
WBsf656752 | |||||||||
WBsf984704 | |||||||||
WBsf218286 | |||||||||
WBsf218287 | |||||||||
WBsf218288 | |||||||||
WBsf218289 | |||||||||
Experimental_info | RNAi_result (53) | ||||||||
Expr_pattern | Expr2437 | ||||||||
Expr13172 | |||||||||
Expr1013389 | |||||||||
Expr1032386 | |||||||||
Expr1151310 | |||||||||
Expr2015847 | |||||||||
Expr2034080 | |||||||||
Drives_construct | WBCnstr00010827 | ||||||||
WBCnstr00035375 | |||||||||
Construct_product | WBCnstr00010827 | ||||||||
WBCnstr00035375 | |||||||||
WBCnstr00039337 | |||||||||
Regulate_expr_cluster | WBPaper00050332:skr-1(RNAi)-skr-2(RNAi)_downregulated | ||||||||
Antibody | WBAntibody00002336 | ||||||||
WBAntibody00002337 | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (98) | |||||||||
Interaction (235) | |||||||||
WBProcess | WBbiopr:00000068 | ||||||||
Map_info | Map | I | Position | 3.76789 | Error | 0.000506 | |||
Positive | Positive_clone | F46A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (31) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |