WormBase Tree Display for Gene: WBGene00004790
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| WBGene00004790 | SMap | S_parent | Sequence | F07H5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sgn-1 | Person_evidence | WBPerson571 | |||||
| Sequence_name | F07H5.2 | ||||||||
| Molecular_name | F07H5.2 | ||||||||
| F07H5.2.1 | |||||||||
| CE05569 | |||||||||
| Other_name | CELE_F07H5.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | sgn-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sgn | ||||||||
| Allele (18) | |||||||||
| Strain | WBStrain00032569 | ||||||||
| WBStrain00036381 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00063743 | ||||||||
| 00063744 | |||||||||
| 00063745 | |||||||||
| 00113192 | |||||||||
| 00113193 | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00019277 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Structured_description | Automated_description | Predicted to be involved in sarcomere organization. Predicted to be located in cytoskeleton and sarcolemma. Predicted to be part of sarcoglycan complex. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2C; autosomal recessive limb-girdle muscular dystrophy type 2F; dilated cardiomyopathy 1L; and type 2 diabetes mellitus. Is an ortholog of human SGCD (sarcoglycan delta); SGCG (sarcoglycan gamma); and SGCZ (sarcoglycan zeta). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110277 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10809) | ||||
| DOID:0110436 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10807) | ||||||
| DOID:0110280 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10807) | ||||||
| DOID:9352 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10809) | ||||||
| DOID:9884 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10807) | ||||||
| Molecular_info | Corresponding_CDS | F07H5.2 | |||||||
| Corresponding_transcript | F07H5.2.1 | ||||||||
| Other_sequence (29) | |||||||||
| Associated_feature | WBsf650365 | ||||||||
| WBsf716528 | |||||||||
| WBsf717741 | |||||||||
| WBsf223546 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012854 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030619 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043942 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017439 | ||||||||
| Expr1032377 | |||||||||
| Expr1147916 | |||||||||
| Expr2015803 | |||||||||
| Expr2034036 | |||||||||
| Drives_construct | WBCnstr00035386 | ||||||||
| Construct_product | WBCnstr00035386 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction | WBInteraction000029976 | ||||||||
| WBInteraction000031709 | |||||||||
| WBInteraction000111257 | |||||||||
| WBInteraction000148670 | |||||||||
| WBInteraction000384333 | |||||||||
| WBInteraction000508064 | |||||||||
| WBInteraction000508065 | |||||||||
| WBInteraction000508066 | |||||||||
| WBInteraction000508067 | |||||||||
| Map_info | Map | II | Position | 0.898175 | Error | 0.002426 | |||
| Positive | Positive_clone | F07H5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4635 | |||||||
| 4659 | |||||||||
| 5550 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005519 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Segalat L]. krb 13/11/01 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
