WormBase Tree Display for Gene: WBGene00004706
expand all nodes | collapse all nodes | view schema
| WBGene00004706 | SMap | S_parent | Sequence | F28D9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rsr-1 | Person_evidence | WBPerson297 | |||||
| Sequence_name | F28D9.1 | ||||||||
| Molecular_name | F28D9.1 | ||||||||
| F28D9.1.1 | |||||||||
| CE30346 | |||||||||
| Other_name | CeSRm160 | ||||||||
| CELE_F28D9.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | rsr-1 | ||||||||
| DB_info | Database | AceView | gene | 1L770 | |||||
| WormQTL | gene | WBGene00004706 | |||||||
| WormFlux | gene | WBGene00004706 | |||||||
| NDB | locus_tag | CELE_F28D9.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004706|UniProtKB=O62185 | |||||||
| family | PTHR23148 | ||||||||
| NCBI | gene | 173013 | |||||||
| RefSeq | protein | NM_001383730.2 | |||||||
| TREEFAM | TREEFAM_ID | TF318972 | |||||||
| TrEMBL | UniProtAcc | O62185 | |||||||
| UniProt_GCRP | UniProtAcc | O62185 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rsr | ||||||||
| Allele (66) | |||||||||
| Strain | WBStrain00032156 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00037254 | ||||||||
| 00037255 | |||||||||
| 00037256 | |||||||||
| 00037257 | |||||||||
| Contained_in_operon | CEOP1896 | ||||||||
| Ortholog (18) | |||||||||
| Structured_description | Concise_description | rsr-1 encodes the C. elegans homolog of the SRm160 (serine/arginine-repeat related nuclear matrix protein of 160kDa) splicing coactivator; rsr-1 is an essential gene that is required for development, including normal pharyngeal morphology. | Paper_evidence | WBPaper00005023 | |||||
| WBPaper00040399 | |||||||||
| WBPaper00026804 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Nov 2011 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Expressed in hypodermis. Human ortholog(s) of this gene implicated in gestational diabetes. Is an ortholog of human SRRM1 (serine and arginine repetitive matrix 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:11714 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16638) | ||||
| Molecular_info | Corresponding_CDS | F28D9.1 | |||||||
| Corresponding_CDS_history | F28D9.1:wp74 | ||||||||
| Corresponding_transcript | F28D9.1.1 | ||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf220313 | ||||||||
| WBsf220314 | |||||||||
| WBsf220315 | |||||||||
| Experimental_info | RNAi_result (26) | ||||||||
| Expr_pattern | Expr149 | ||||||||
| Expr1016657 | |||||||||
| Expr1032326 | |||||||||
| Expr1149742 | |||||||||
| Expr2015566 | |||||||||
| Expr2033801 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (87) | |||||||||
| Interaction (43) | |||||||||
| Map_info | Map | I | Position | 7.24727 | Error | 0.098402 | |||
| Positive | Positive_clone | F28D9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4851 | |||||||
| 4818 | |||||||||
| 4410 | |||||||||
| 5393 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003988 | ||||||||
| WBPaper00005960 | |||||||||
| WBPaper00006292 | |||||||||
| WBPaper00026804 | |||||||||
| WBPaper00032289 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040399 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
