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WormBase Tree Display for Gene: WBGene00004704

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Name Class

WBGene00004704SMapS_parentSequenceCHROMOSOME_II
IdentityVersion1
NameCGC_namersp-7Person_evidenceWBPerson297
Sequence_nameD2089.1
Molecular_nameD2089.1a
D2089.1a.1
CE03111
D2089.1b
CE30507
D2089.1b.1
D2089.1b.2
Other_nameCELE_D2089.1Accession_evidenceNDBBX284602
Public_namersp-7
DB_infoDatabaseAceViewgene2K951
WormQTLgeneWBGene00004704
WormFluxgeneWBGene00004704
NDBlocus_tagCELE_D2089.1
PanthergeneCAEEL|WormBase=WBGene00004704|UniProtKB=O01159
familyPTHR32343
NCBIgene174646
RefSeqproteinNM_001383939.2
NM_001393181.1
SwissProtUniProtAccO01159
TREEFAMTREEFAM_IDTF106266
UniProt_GCRPUniProtAccO01159
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrsp
Allele (46)
StrainWBStrain00036756
RNASeq_FPKM (74)
GO_annotation00024426
00024427
00024428
00024429
00024430
00024431
00024432
00024433
00113088
00113089
OrthologWBGene00053430Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00025981Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00163869Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00128181Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WBGene00097770Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
CSP21.g9093Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1663Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12292Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9167Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP40.g17321Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_II.g5722Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8883Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_03642.g30837Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21938Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14504Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5702Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20289710Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g5787Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00259188Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0024285Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-605Danio rerioFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-040801-132Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:10782Homo sapiensFrom_analysisOMA
OrthoFinder
Panther
HGNC:17882Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
PhylomeDB
SonicParanoid
MGI:1916457Mus musculusFrom_analysisOMA
OrthoFinder
Panther
MGI:2145245Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
Panther
PhylomeDB
SonicParanoid
RGD:621696Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
Panther
PhylomeDB
SonicParanoid
RGD:1559953Rattus norvegicusFrom_analysisOMA
OrthoFinder
Panther
Structured_descriptionConcise_descriptionrsp-7 encodes the C. elegans ortholog of the vertebrate p54 splicing factor and member of the SR protein family of nuclear phosphoproteins that are required for constitutive splicing and influence alternative splicing regulation.Paper_evidenceWBPaper00003988
Curator_confirmedWBPerson1843
Date_last_updated20 Mar 2012 00:00:00
Automated_descriptionPredicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleoplasm. Human ortholog(s) of this gene implicated in autism spectrum disorder and myelodysplastic syndrome. Is an ortholog of human SREK1 (splicing regulatory glutamic acid and lysine rich protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050908Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10782)
DOID:0060041Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10782)
Molecular_infoCorresponding_CDSD2089.1a
D2089.1b
Corresponding_CDS_historyD2089.1:wp77
Corresponding_transcriptD2089.1a.1
D2089.1b.1
D2089.1b.2
Other_sequence (51)
Associated_featureWBsf047599
WBsf658153
WBsf658154
WBsf222047
Experimental_infoRNAi_result (18)
Expr_patternExpr1015913
Expr1032324
Expr1147502
Expr2015564
Expr2033799
Drives_constructWBCnstr00035430
Construct_productWBCnstr00035430
Microarray_results (36)
Expression_cluster (123)
Interaction (21)
Map_infoMapIIPosition3.12321
PositivePositive_cloneD2089Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00003988
WBPaper00026593
WBPaper00030511
WBPaper00035228
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
[200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (3.12304)
MethodGene