WormBase Tree Display for Gene: WBGene00004498

WBGene00004498 SMap: S_parent: Sequence: B0412
  Identity: Version: 1
    Name: CGC_name: rps-29
      Sequence_name: B0412.4
      Molecular_name: B0412.4
        B0412.4.1
        CE26849
      Other_name: CELE_B0412.4 Accession_evidence: NDB BX284603
      Public_name: rps-29
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele (14)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps29 using blastP
    Strain: WBStrain00002343
    RNASeq_FPKM (74)
    GO_annotation: 00049653
      00049654
      00049655
      00049656
      00049657
      00049658
      00113037
      00113038
      00113039
      00113040
    Contained_in_operon: CEOP3036
    Ortholog: WBGene00035600 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            WormBase-Compara
      WBGene00064869 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00195055 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00090229 Pristionchus pacificus From_analysis: OMA
      WBGene00234345 Brugia malayi From_analysis: WormBase-Compara
      CSP39.g5579 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Csp11.Scaffold630.g16669 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      GCK72_011871 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00255478 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00277938 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00260563 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000004380 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      SGD:S000002219 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0261599 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040622-5 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10419 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:107681 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:3596 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:11433440 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:11511017 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:11376557 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: rps-29 encodes a small ribosomal subunit S29 protein; by homology, RPS-29 is predicted to function in protein biosynthesis; in C. elegans, RPS-29 activity is broadly required for embryonic and germline development, normal body coloration and morphology, normal postembryonic growth rates, and the overall health of the animal. Paper_evidence: WBPaper00004403
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable zinc ion binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 13. Is an ortholog of human RPS29 (ribosomal protein S29). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0111889 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10419)
  Molecular_info: Corresponding_CDS: B0412.4
    Corresponding_transcript: B0412.4.1
    Other_sequence (327)
    Associated_feature: WBsf644926
      WBsf991160
      WBsf224396
      WBsf224397
  Experimental_info: RNAi_result (27)
    Expr_pattern: Chronogram1269
      Expr5067
      Expr1023586
      Expr1032301
      Expr1143196
      Expr2015524
      Expr2033759
    Drives_construct: WBCnstr00003012
    Microarray_results (21)
    Expression_cluster (142)
    Interaction (157)
  Map_info: Map: III Position: -25.9426 Error: 0.030105
    Positive: Positive_clone: B0412 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00010022
    WBPaper00024230
    WBPaper00028564
    WBPaper00035215
    WBPaper00036019
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene