WormBase Tree Display for Gene: WBGene00004490
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| WBGene00004490 | SMap | S_parent | Sequence | F37C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rps-21 | |||||||
| Sequence_name | F37C12.11 | ||||||||
| Molecular_name | F37C12.11 | ||||||||
| F37C12.11.1 | |||||||||
| CE30779 | |||||||||
| Other_name | CELE_F37C12.11 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rps-21 | ||||||||
| DB_info | Database | AceView | gene | 3I278 | |||||
| WormQTL | gene | WBGene00004490 | |||||||
| WormFlux | gene | WBGene00004490 | |||||||
| NDB | locus_tag | CELE_F37C12.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004490|UniProtKB=P49197 | |||||||
| family | PTHR10442 | ||||||||
| NCBI | gene | 176011 | |||||||
| RefSeq | protein | NM_066178.10 | |||||||
| SwissProt | UniProtAcc | P49197 | |||||||
| TREEFAM | TREEFAM_ID | TF300167 | |||||||
| UniProt_GCRP | UniProtAcc | P49197 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele | WBVar01500260 | ||||||||
| WBVar01645365 | |||||||||
| WBVar01499774 | |||||||||
| WBVar01825495 | |||||||||
| WBVar01499237 | |||||||||
| WBVar02053330 | |||||||||
| WBVar00837914 | |||||||||
| WBVar00837915 | |||||||||
| WBVar00837916 | |||||||||
| WBVar00401240 | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps21 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (35) | |||||||||
| Structured_description | Concise_description | rps-21 encodes a small ribosomal subunit S21 protein; by homology, RPS-21 is predicted to function in protein biosynthesis; in C. elegans, RPS-21 activity is required for embryonic and germline development, as well as the overall health of the animal. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of ribosome. Predicted to be involved in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in cytosol; ribosome; and rough endoplasmic reticulum. Predicted to be part of cytosolic small ribosomal subunit. Is an ortholog of human RPS21 (ribosomal protein S21). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F37C12.11 | |||||||
| Corresponding_transcript | F37C12.11.1 | ||||||||
| Other_sequence (285) | |||||||||
| Associated_feature | WBsf651180 | ||||||||
| WBsf667046 | |||||||||
| WBsf992955 | |||||||||
| WBsf1015202 | |||||||||
| WBsf226926 | |||||||||
| WBsf226927 | |||||||||
| Experimental_info | RNAi_result (29) | ||||||||
| Expr_pattern | Chronogram728 | ||||||||
| Chronogram1946 | |||||||||
| Expr5980 | |||||||||
| Expr1011153 | |||||||||
| Expr1032293 | |||||||||
| Expr1150488 | |||||||||
| Expr2015516 | |||||||||
| Expr2033751 | |||||||||
| Drives_construct | WBCnstr00003591 | ||||||||
| WBCnstr00035445 | |||||||||
| Construct_product | WBCnstr00035445 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (167) | |||||||||
| Interaction (260) | |||||||||
| Map_info | Map | III | Position | -0.775211 | Error | 0.000213 | |||
| Positive | Positive_clone | F37C12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028564 | ||||||||
| WBPaper00033090 | |||||||||
| WBPaper00035215 | |||||||||
| WBPaper00035286 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
