WormBase Tree Display for Gene: WBGene00004477
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| WBGene00004477 | SMap | S_parent | Sequence | F42C5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rps-8 | |||||||
| Sequence_name | F42C5.8 | ||||||||
| Molecular_name | F42C5.8a | ||||||||
| F42C5.8a.1 | |||||||||
| CE04561 | |||||||||
| F42C5.8b | |||||||||
| CE49256 | |||||||||
| F42C5.8b.1 | |||||||||
| Other_name | CELE_F42C5.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rps-8 | ||||||||
| DB_info | Database | AceView | gene | 4I78 | |||||
| WormQTL | gene | WBGene00004477 | |||||||
| WormFlux | gene | WBGene00004477 | |||||||
| NDB | locus_tag | CELE_F42C5.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004477|UniProtKB=P48156 | |||||||
| family | PTHR10394 | ||||||||
| NCBI | gene | 177503 | |||||||
| RefSeq | protein | NM_001383118.2 | |||||||
| NM_001380319.1 | |||||||||
| SwissProt | UniProtAcc | P48156 | |||||||
| TrEMBL | UniProtAcc | V6CM07 | |||||||
| UniProt_GCRP | UniProtAcc | P48156 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele (12) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps8 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (46) | |||||||||
| Structured_description | Concise_description | rps-8 encodes a small ribosomal subunit S8 protein; by homology, RPS-8 is predicted to function in protein biosynthesis; in C. elegans, RPS-8 activity is required for germline development and the overall health of the animal. | Paper_evidence | WBPaper00005654 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in cytoplasm; intracellular non-membrane-bounded organelle; and membrane. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Is an ortholog of human RPS8 (ribosomal protein S8). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F42C5.8a | |||||||
| F42C5.8b | |||||||||
| Corresponding_transcript | F42C5.8a.1 | ||||||||
| F42C5.8b.1 | |||||||||
| Other_sequence (377) | |||||||||
| Associated_feature | WBsf651900 | ||||||||
| WBsf651901 | |||||||||
| WBsf667675 | |||||||||
| WBsf667676 | |||||||||
| WBsf668009 | |||||||||
| WBsf668010 | |||||||||
| WBsf996936 | |||||||||
| WBsf230248 | |||||||||
| WBsf230249 | |||||||||
| Experimental_info | RNAi_result (42) | ||||||||
| Expr_pattern | Expr1027055 | ||||||||
| Expr1032280 | |||||||||
| Expr1150955 | |||||||||
| Expr2015532 | |||||||||
| Expr2033767 | |||||||||
| Drives_construct | WBCnstr00035455 | ||||||||
| Construct_product | WBCnstr00035455 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (138) | |||||||||
| Interaction (301) | |||||||||
| Map_info | Map | IV | Position | 3.31948 | |||||
| Positive | Positive_clone | F42C5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025088 | ||||||||
| WBPaper00029254 | |||||||||
| WBPaper00032961 | |||||||||
| WBPaper00035215 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00037615 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
