WormBase Tree Display for Gene: WBGene00004472

WBGene00004472 SMap: S_parent: Sequence: C23G10
  Identity: Version: 1
    Name: CGC_name: rps-3
      Sequence_name: C23G10.3
      Molecular_name: C23G10.3
        C23G10.3.1
        CE01810
      Other_name: CELE_C23G10.3 Accession_evidence: NDB BX284603
      Public_name: rps-3
    DB_info: Database: AceView gene 3H297
        WormQTL gene WBGene00004472
        WormFlux gene WBGene00004472
        NDB locus_tag CELE_C23G10.3
        Panther gene CAEEL|WormBase=WBGene00004472|UniProtKB=P48152
          family PTHR11760
        NCBI gene 175879
        RefSeq protein NM_065948.6
        SwissProt UniProtAcc P48152
        TREEFAM TREEFAM_ID TF300901
        UniProt_GCRP UniProtAcc P48152
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele (23)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps3 using blastP
    Strain: WBStrain00003358
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP3356
    Ortholog: WBGene00055408 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00042417 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00144972 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00114199 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00137169 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00222581 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5164 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1790 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6020 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11951 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g14881 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6568 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6419 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3776 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18597 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g8966 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g11272 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00349.g9583 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rps-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold596.g5263 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01577.g21849 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_08863 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010784 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08275 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g17387 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30151200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7880 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00244977 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261203 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00287884 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000005122 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0002622 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-8494 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10420 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1350917 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:619888 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1560831 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: rps-3 encodes a small ribosomal subunit S3 protein that contains a KH RNA-binding domain and by homology,is predicted to function in protein biosynthesis; in C. elegans, RPS-3 activity is required for embryonic and germline development, as well as the overall health of the animal. Paper_evidence: WBPaper00004403
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in positive regulation of apoptotic signaling pathway. Predicted to be located in nucleus. Predicted to be part of cytosolic small ribosomal subunit. Is an ortholog of human RPS3 (ribosomal protein S3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C23G10.3
    Corresponding_transcript: C23G10.3.1
    Other_sequence (335)
    Associated_feature: WBsf654967
      WBsf658521
      WBsf659036
      WBsf992675
  Experimental_info: RNAi_result (29)
    Expr_pattern: Chronogram1016
      Expr1022377
      Expr1032275
      Expr1145052
      Expr2015527
      Expr2033762
    Drives_construct: WBCnstr00003829
      WBCnstr00035458
    Construct_product: WBCnstr00035458
    Antibody: WBAntibody00002839
    Microarray_results (21)
    Expression_cluster (157)
    Interaction (338)
  Map_info: Map: III Position: -1.40877 Error: 0.00017
    Positive: Positive_clone: C23G10 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00029254
    WBPaper00035228
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00063976
    WBPaper00064257
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene