WormBase Tree Display for Gene: WBGene00004453

WBGene00004453 SMap: S_parent: Sequence: C26F1
  Identity: Version: 1
    Name: CGC_name: rpl-39
      Sequence_name: C26F1.9
      Molecular_name: C26F1.9
        C26F1.9.1
        CE06883
      Other_name: 5I256 Accession_evidence: EMBL AF303271
        CELE_C26F1.9 Accession_evidence: NDB BX284605
      Public_name: rpl-39
    DB_info: Database: AceView gene 5I256
        WormQTL gene WBGene00004453
        WormFlux gene WBGene00004453
        NDB locus_tag CELE_C26F1.9
        Panther gene CAEEL|WormBase=WBGene00004453|UniProtKB=P52814
          family PTHR19970
        NCBI gene 179153
        RefSeq protein NM_001392549.1
        SwissProt UniProtAcc P52814
        TREEFAM TREEFAM_ID TF300223
        UniProt_GCRP UniProtAcc P52814
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele (11)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl39 using blastP
    RNASeq_FPKM (74)
    GO_annotation: 00047874
      00047875
      00047876
      00112919
      00112920
      00112921
    Ortholog (21)
    Structured_description: Concise_description: rpl-39 encodes a large ribosomal subunit L39 protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL39 (ribosomal protein L39) and RPL39P5 (ribosomal protein L39 pseudogene 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C26F1.9
    Corresponding_transcript: C26F1.9.1
    Other_sequence (448)
    Associated_feature: WBsf652791
      WBsf652792
      WBsf669132
      WBsf1019950
      WBsf233986
  Experimental_info: RNAi_result: WBRNAi00094070 Inferred_automatically: RNAi_primary
      WBRNAi00008443 Inferred_automatically: RNAi_primary
      WBRNAi00072951 Inferred_automatically: RNAi_primary
      WBRNAi00072949 Inferred_automatically: RNAi_primary
      WBRNAi00033486 Inferred_automatically: RNAi_primary
      WBRNAi00085642 Inferred_automatically: RNAi_primary
      WBRNAi00024646 Inferred_automatically: RNAi_primary
      WBRNAi00041286 Inferred_automatically: RNAi_primary
      WBRNAi00064931 Inferred_automatically: RNAi_primary
      WBRNAi00072950 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016181
      Expr1032257
      Expr1145327
      Expr2015472
      Expr2033707
    Drives_construct: WBCnstr00035473
    Construct_product: WBCnstr00035473
    Microarray_results (17)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00032528:L3_enriched
      WBPaper00033065:isp-1-1(qm150)_upregulated
      WBPaper00038118:aak-2(gt33)_downregulated
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00040209:B.thuringiensis_upregulated_MY15
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045050:drh-3 (ne4253)_downregulated
      WBPaper00045303:ZK1236.1(tm4178)_downregulated
      WBPaper00045401:N.parisii_30h_upregulated
      WBPaper00045521:Spermatogenic
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050225:flp-6(RNAi)_downregulated
      WBPaper00050234:lin-28(RNAi)_downregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050412:cco-1(RNAi)_downregulated_N2
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051265:F4_morc-1(tm6048)_downregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053664:ins-11(tm1053)_upregulated
      WBPaper00053814:OP50_vs_PY79_downregulated_PY79
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056826:SGP_biased
      WBPaper00056900:PID-3_interacting
      WBPaper00056997:nmad-1(ok3133)_downregulated_germline_25C
      WBPaper00057083:daf-2(e1370)rsks-1(ok1255)_post-transcriptional_downregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061340:M_cell
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061377:MYRF-1_interacting
      WBPaper00061390:daf-22(ok693)_ascarosides_downregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061527:rps-14_21270-rps-11_20714
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061651:ADA_enriched
      WBPaper00061651:CAN_enriched
      WBPaper00061651:Germline_enriched
      WBPaper00061651:M2_enriched
      WBPaper00061651:MC_enriched
      WBPaper00061651:MI_enriched
      WBPaper00061651:PDB_enriched
      WBPaper00061651:RID_enriched
      WBPaper00061651:RIG_enriched
      WBPaper00061651:RIH_enriched
      WBPaper00061651:Spermatheca_enriched
      WBPaper00061651:XXX_enriched
      WBPaper00061818:AFD_enriched_protein
      WBPaper00062056:lin-35(n745)_downregulated
      WBPaper00062143:PQN-59_interacting
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062237:dnj-21(RNAi)_downregulated_protein
      WBPaper00062325:etr-1(lq61)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064055:trl-1(cas1077)_downregulated_non-starved
      WBPaper00064055:trl-1(cas1077)_downregulated_starved
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00064403:Heat-killed-E.Coli_upregulated
      WBPaper00064727:daf-2(e1370)_downregulated
      WBPaper00065149:lin-52(n771)_downregulated
      WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00066085:hda-3(ok1991)_downregulated
      WBPaper00066085:sin-3(syb2172)_downregulated
      cgc4489_group_6
      WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
      WBPaper00025032:cluster_95
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026629:L2_male_enriched
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026952:class_E
      WBPaper00026980:intestine_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_7
      WBPaper00034739:N2moreDR1350
      WBPaper00035479:daf-16(RNAi)_upregulated
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      [cgc5767]:cluster_2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(PC32)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_A
    Interaction (198)
  Map_info: Map: V Position: 0.888062
    Positive: Positive_clone: C26F1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (0.88)
  Method: Gene