WormBase Tree Display for Gene: WBGene00004453

WBGene00004453 SMap: S_parent: Sequence: C26F1
  Identity: Version: 1
    Name: CGC_name: rpl-39
      Sequence_name: C26F1.9
      Molecular_name: C26F1.9
        C26F1.9.1
        CE06883
      Other_name: 5I256 Accession_evidence: EMBL AF303271
        CELE_C26F1.9 Accession_evidence: NDB BX284605
      Public_name: rpl-39
    DB_info: Database: AceView gene 5I256
        WormQTL gene WBGene00004453
        WormFlux gene WBGene00004453
        NDB locus_tag CELE_C26F1.9
        Panther gene CAEEL|WormBase=WBGene00004453|UniProtKB=P52814
          family PTHR19970
        NCBI gene 179153
        RefSeq protein NM_001392549.1
        SwissProt UniProtAcc P52814
        TREEFAM TREEFAM_ID TF300223
        UniProt_GCRP UniProtAcc P52814
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele (11)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl39 using blastP
    RNASeq_FPKM (74)
    GO_annotation: 00047874
      00047875
      00047876
      00112919
      00112920
      00112921
    Ortholog (21)
    Structured_description: Concise_description: rpl-39 encodes a large ribosomal subunit L39 protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL39 (ribosomal protein L39) and RPL39P5 (ribosomal protein L39 pseudogene 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C26F1.9
    Corresponding_transcript: C26F1.9.1
    Other_sequence (448)
    Associated_feature: WBsf652791
      WBsf652792
      WBsf669132
      WBsf1019950
      WBsf233986
  Experimental_info: RNAi_result: WBRNAi00094070 Inferred_automatically: RNAi_primary
      WBRNAi00008443 Inferred_automatically: RNAi_primary
      WBRNAi00072951 Inferred_automatically: RNAi_primary
      WBRNAi00072949 Inferred_automatically: RNAi_primary
      WBRNAi00033486 Inferred_automatically: RNAi_primary
      WBRNAi00085642 Inferred_automatically: RNAi_primary
      WBRNAi00024646 Inferred_automatically: RNAi_primary
      WBRNAi00041286 Inferred_automatically: RNAi_primary
      WBRNAi00064931 Inferred_automatically: RNAi_primary
      WBRNAi00072950 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016181
      Expr1032257
      Expr1145327
      Expr2015472
      Expr2033707
    Drives_construct: WBCnstr00035473
    Construct_product: WBCnstr00035473
    Microarray_results (17)
    Expression_cluster (128)
    Interaction (198)
  Map_info: Map: V Position: 0.888062
    Positive: Positive_clone: C26F1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (0.88)
  Method: Gene