WormBase Tree Display for Gene: WBGene00004452

WBGene00004452 SMap: S_parent: Sequence: C06B8
  Identity: Version: 1
    Name: CGC_name: rpl-38
      Sequence_name: C06B8.8
      Molecular_name: C06B8.8
        C06B8.8.1
        CE20485
        C06B8.8.2
        C06B8.8.3
        C06B8.8.4
      Other_name: CELE_C06B8.8 Accession_evidence: NDB BX284605
      Public_name: rpl-38
    DB_info: Database: AceView gene 5P991
        WormQTL gene WBGene00004452
        WormFlux gene WBGene00004452
        NDB locus_tag CELE_C06B8.8
        Panther gene CAEEL|WormBase=WBGene00004452|UniProtKB=O17570
          family PTHR10965
        NCBI gene 180044
        RefSeq protein NM_074459.8
        SwissProt UniProtAcc O17570
        TREEFAM TREEFAM_ID TF300215
        UniProt_GCRP UniProtAcc O17570
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele (19)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl38 using blastP
    Strain: WBStrain00003496
      WBStrain00055498
    RNASeq_FPKM (74)
    GO_annotation: 00029882
      00029883
      00029884
      00029885
      00029886
      00112916
      00112917
      00112918
    Ortholog (44)
    Structured_description: Concise_description: rpl-38 encodes a large ribosomal subunit L38 protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in protein-RNA complex assembly. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL38 (ribosomal protein L38). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C06B8.8
    Corresponding_transcript: C06B8.8.1
      C06B8.8.2
      C06B8.8.3
      C06B8.8.4
    Other_sequence (391)
    Associated_feature: WBsf647597
      WBsf233033
      WBsf233034
  Experimental_info: RNAi_result: WBRNAi00008352 Inferred_automatically: RNAi_primary
      WBRNAi00110714 Inferred_automatically: RNAi_primary
      WBRNAi00072906 Inferred_automatically: RNAi_primary
      WBRNAi00072907 Inferred_automatically: RNAi_primary
      WBRNAi00039862 Inferred_automatically: RNAi_primary
      WBRNAi00064230 Inferred_automatically: RNAi_primary
      WBRNAi00072905 Inferred_automatically: RNAi_primary
      WBRNAi00028559 Inferred_automatically: RNAi_primary
      WBRNAi00024485 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram459
      Expr1022793
      Expr1032256
      Expr1143946
      Expr2015471
      Expr2033706
    Drives_construct: WBCnstr00003954
      WBCnstr00035474
    Construct_product: WBCnstr00035474
    Microarray_results (28)
    Expression_cluster (181)
    Interaction (151)
  Map_info: Map: V Position: 8.32598 Error: 0.000971
    Positive: Positive_clone: C06B8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005654
    WBPaper00006028
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene