WormBase Tree Display for Gene: WBGene00004448
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| WBGene00004448 | SMap | S_parent | Sequence | C42C1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpl-34 | |||||||
| Sequence_name | C42C1.14 | ||||||||
| Molecular_name | C42C1.14 | ||||||||
| C42C1.14.1 | |||||||||
| CE26911 | |||||||||
| Other_name | CELE_C42C1.14 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rpl-34 | ||||||||
| DB_info | Database | AceView | gene | 4N33 | |||||
| WormQTL | gene | WBGene00004448 | |||||||
| WormFlux | gene | WBGene00004448 | |||||||
| NDB | locus_tag | CELE_C42C1.14 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004448|UniProtKB=A3QMC5 | |||||||
| family | PTHR10759 | ||||||||
| NCBI | gene | 178173 | |||||||
| RefSeq | protein | NM_069929.7 | |||||||
| TREEFAM | TREEFAM_ID | TF314326 | |||||||
| TrEMBL | UniProtAcc | A3QMC5 | |||||||
| UniProt_GCRP | UniProtAcc | A3QMC5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpl | ||||||||
| Allele (15) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rpl34 using blastP | ||||||||
| Strain | WBStrain00003464 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00004373 | ||||||||
| 00004374 | |||||||||
| 00004375 | |||||||||
| 00004376 | |||||||||
| 00004377 | |||||||||
| 00004378 | |||||||||
| 00004379 | |||||||||
| 00112902 | |||||||||
| 00112903 | |||||||||
| 00112904 | |||||||||
| Ortholog (42) | |||||||||
| Structured_description | Concise_description | rpl-34 encodes a putative large ribosomal subunit L34 protein that inhibits DHC-1 in vivo; RPL-34 is expressed in most somatic tissues of larvae and adults; in mass RNAi assays, RPL-34 is required for embryonic and larval development, normally rapid growth, and normal body coloration. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00006395 | |||||||||
| WBPaper00006525 | |||||||||
| WBPaper00024497 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00030897 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 26 Aug 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosome biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL34 (ribosomal protein L34). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C42C1.14 | |||||||
| Corresponding_transcript | C42C1.14.1 | ||||||||
| Other_sequence (232) | |||||||||
| Associated_feature | WBsf229264 | ||||||||
| WBsf229265 | |||||||||
| WBsf229266 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00042335 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033470 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5485 | ||||||||
| Expr1027311 | |||||||||
| Expr1032252 | |||||||||
| Expr1146327 | |||||||||
| Expr2015466 | |||||||||
| Expr2033701 | |||||||||
| Drives_construct | WBCnstr00003925 | ||||||||
| WBCnstr00035478 | |||||||||
| Construct_product | WBCnstr00035478 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (148) | |||||||||
| Interaction (173) | |||||||||
| Map_info | Map | IV | Position | 5.82877 | |||||
| Positive | Positive_clone | C42C1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | rpl-34 is described as "Orthologous to yeast (S.cerevisiae) ribosomal protein rpl34 using blastP". As it happens, there appears to be no distinct yeast L34. However, there is a 60S ribosomal protein L34 from Homo sapiens (ref|NP_296374); BlastP with ref|NP_296374 gives one hit in the genome with E < 0.01, namely to C42C1.14 | Person_evidence | WBPerson567 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
