WormBase Tree Display for Gene: WBGene00004443

WBGene00004443 SMap: S_parent: Sequence: B0513
  Identity: Version: 1
    Name: CGC_name: rpl-29
      Sequence_name: B0513.3
      Molecular_name: B0513.3a
        B0513.3a.1
        CE15559
        B0513.3b
        CE44704
        B0513.3b.1
      Other_name: CELE_B0513.3 Accession_evidence: NDB BX284604
      Public_name: rpl-29
    DB_info: Database: AceView gene 4O647
        WormQTL gene WBGene00004443
        WormFlux gene WBGene00004443
        NDB locus_tag CELE_B0513.3
        Panther gene CAEEL|WormBase=WBGene00004443|UniProtKB=O45226
          family PTHR12884
        NCBI gene 178352
        RefSeq protein NM_001268835.3
            NM_001268834.2
        TrEMBL UniProtAcc D3YT71
            O45226
        UniProt_GCRP UniProtAcc O45226
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele (23)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl29 using blastP
      NMK. 0.6 kb transcript, transspliced to SL1;encodes predicted ribosomal protein (87%identical to yeast).[Bektesh et al. 1988; DH]
    Strain: WBStrain00005441
      WBStrain00050657
    RNASeq_FPKM (74)
    GO_annotation: 00007523
      00007524
      00007525
      00007526
      00034046
      00034047
      00112889
      00112890
      00112891
    Contained_in_operon: CEOP4568
    Ortholog: WBGene00040965 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00075864 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00271727 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00222105 Brugia malayi From_analysis: WormBase-Compara
      CSP26.g18871 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP38.g12835 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9390 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Csp5_scaffold_00574.g13048 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14598 Caenorhabditis latens From_analysis: WormBase-Compara
      Sp34_40270210 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00070159 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00240399 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00278724 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00256052 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000006437 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0016726 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040801-167 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10331 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:99687 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:3781727 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:62069 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1563300 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1559877 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:40972876 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:41169375 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Structured_description: Concise_description: rpl-29 encodes a large ribosomal subunit L29 protein; by homology, RPL-29 is predicted to function in protein biosynthesis; in C. elegans, loss of rpl-29 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities. Paper_evidence: WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL29 (ribosomal protein L29). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0513.3a
      B0513.3b
    Corresponding_transcript: B0513.3a.1
      B0513.3b.1
    Associated_feature: WBsf646542
      WBsf646543
      WBsf981844
      WBsf998474
      WBsf1018579
      WBsf229463
      WBsf229464
  Experimental_info: RNAi_result: WBRNAi00009830 Inferred_automatically: RNAi_primary
      WBRNAi00093769 Inferred_automatically: RNAi_primary
      WBRNAi00039155 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr15108
      Expr1023321
      Expr1032247
      Expr1143310
      Expr2015460
      Expr2033695
    Drives_construct: WBCnstr00035482
      WBCnstr00039102
    Construct_product: WBCnstr00035482
      WBCnstr00039102
    Microarray_results (24)
    Expression_cluster (125)
    Interaction (130)
  Map_info: Map: IV Position: 10.8984 Error: 0.001533
    Positive: Positive_clone: B0513 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00002874
    WBPaper00025088
    WBPaper00035149
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene