WormBase Tree Display for Gene: WBGene00004429

WBGene00004429 SMap: S_parent: Sequence: Y48G8AL
  Identity: Version: 1
    Name: CGC_name: rpl-17
      Sequence_name: Y48G8AL.8
      Molecular_name: Y48G8AL.8
        Y48G8AL.8.1
        CE22195
      Other_name: CELE_Y48G8AL.8 Accession_evidence: NDB BX284601
      Public_name: rpl-17
    DB_info: Database: AceView gene 1B631
        WormQTL gene WBGene00004429
        WormFlux gene WBGene00004429
        NDB locus_tag CELE_Y48G8AL.8
        Panther gene CAEEL|WormBase=WBGene00004429|UniProtKB=Q9BL19
          family PTHR11593
        NCBI gene 171692
        RefSeq protein NM_170799.7
        SwissProt UniProtAcc Q9BL19
        UniProt_GCRP UniProtAcc Q9BL19
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele (20)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl17 using blastP
    RNASeq_FPKM (74)
    GO_annotation: 00091792
      00091793
      00091794
      00091795
      00091796
      00112850
      00112851
      00112852
      00112853
    Contained_in_operon: CEOP1016
    Ortholog: WBGene00056321 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00030287 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00153063 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00120034 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00139128 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00226935 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10189 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10562 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4919 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g10034 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g16631 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g19728 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g16851 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6483 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18390 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7417 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00295.g8701 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rpl-17 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16059 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00617.g13611 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16188 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002003 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09889 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g3650 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10266600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g166 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00240436 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00281662 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258730 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291622 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003713 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      SGD:S000001663 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0029897 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-8585 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10307 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2448270 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:3647029 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1303019 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1359290 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1560017 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: rpl-17 encodes a large ribosomal subunit L17 protein; by homology, RPL-17 is predicted to function in protein biosynthesis; in C. elegans, RPL-17 activity is required for embryonic and germline development, as well as normal postembryonic growth rates. Paper_evidence: WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL17 (ribosomal protein L17). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y48G8AL.8
    Corresponding_CDS_history: Y48G8AL.8b:wp253
    Corresponding_transcript: Y48G8AL.8.1
    Other_sequence (418)
    Associated_feature: WBsf643044
      WBsf655890
      WBsf980939
      WBsf217190
      WBsf217191
  Experimental_info: RNAi_result (23)
    Expr_pattern (11)
    Drives_construct: WBCnstr00003552
      WBCnstr00009755
      WBCnstr00009756
      WBCnstr00035493
    Construct_product: WBCnstr00035493
    Antibody: WBAntibody00002468
    Microarray_results (33)
    Expression_cluster (176)
    Interaction (304)
  Map_info: Map: I Position: -16.9301 Error: 0.002606
    Positive: Positive_clone: Y48G8AL Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025088
    WBPaper00028984
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00064023
    WBPaper00064339
    WBPaper00064934
    WBPaper00065861
  Remark: rpl-17 is described as "Orthologous to yeast (S.cerevisiae) ribosomal protein rpl17 using blastP". BlastP with sp|P05740|R171_YEAST gives one hit in the genome with E < 0.01, namely to Y48G8AL.8a/b Person_evidence: WBPerson567
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene