WormBase Tree Display for Gene: WBGene00004429
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| WBGene00004429 | SMap | S_parent | Sequence | Y48G8AL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpl-17 | |||||||
| Sequence_name | Y48G8AL.8 | ||||||||
| Molecular_name | Y48G8AL.8 | ||||||||
| Y48G8AL.8.1 | |||||||||
| CE22195 | |||||||||
| Other_name | CELE_Y48G8AL.8 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rpl-17 | ||||||||
| DB_info | Database | AceView | gene | 1B631 | |||||
| WormQTL | gene | WBGene00004429 | |||||||
| WormFlux | gene | WBGene00004429 | |||||||
| NDB | locus_tag | CELE_Y48G8AL.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004429|UniProtKB=Q9BL19 | |||||||
| family | PTHR11593 | ||||||||
| NCBI | gene | 171692 | |||||||
| RefSeq | protein | NM_170799.7 | |||||||
| SwissProt | UniProtAcc | Q9BL19 | |||||||
| UniProt_GCRP | UniProtAcc | Q9BL19 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpl | ||||||||
| Allele (20) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rpl17 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00091792 | ||||||||
| 00091793 | |||||||||
| 00091794 | |||||||||
| 00091795 | |||||||||
| 00091796 | |||||||||
| 00112850 | |||||||||
| 00112851 | |||||||||
| 00112852 | |||||||||
| 00112853 | |||||||||
| Contained_in_operon | CEOP1016 | ||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | rpl-17 encodes a large ribosomal subunit L17 protein; by homology, RPL-17 is predicted to function in protein biosynthesis; in C. elegans, RPL-17 activity is required for embryonic and germline development, as well as normal postembryonic growth rates. | Paper_evidence | WBPaper00005654 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL17 (ribosomal protein L17). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48G8AL.8 | |||||||
| Corresponding_CDS_history | Y48G8AL.8b:wp253 | ||||||||
| Corresponding_transcript | Y48G8AL.8.1 | ||||||||
| Other_sequence (418) | |||||||||
| Associated_feature | WBsf643044 | ||||||||
| WBsf655890 | |||||||||
| WBsf980939 | |||||||||
| WBsf217190 | |||||||||
| WBsf217191 | |||||||||
| Experimental_info | RNAi_result (23) | ||||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00003552 | ||||||||
| WBCnstr00009755 | |||||||||
| WBCnstr00009756 | |||||||||
| WBCnstr00035493 | |||||||||
| Construct_product | WBCnstr00035493 | ||||||||
| Antibody | WBAntibody00002468 | ||||||||
| Microarray_results | SMD_Y48G8A_3945.C | ||||||||
| 173380_at | |||||||||
| A_12_P119729 | |||||||||
| A_12_P157958 | |||||||||
| A_12_P157959 | |||||||||
| A_12_P158430 | |||||||||
| A_12_P158431 | |||||||||
| A_12_P158432 | |||||||||
| A_12_P158433 | |||||||||
| A_12_P158434 | |||||||||
| A_12_P158525 | |||||||||
| Aff_Y48G8A_3945.C | |||||||||
| GPL13394_WBGene00004429 | |||||||||
| GPL13914_Y48G8AL.8 | |||||||||
| GPL14144_Y48G8AL.8a_148-207_0.873_12_C | |||||||||
| GPL14144_Y48G8AL.8a_340-399_0.902_9_B | |||||||||
| GPL14144_Y48G8AL.8a_499-558_0.971_1_A | |||||||||
| GPL19516_CGZ0013183 | |||||||||
| GPL19516_CGZ0047273 | |||||||||
| GPL19516_CGZ0047274 | |||||||||
| GPL21109_Y48G8AL.8a | |||||||||
| GPL3518_CE22195 | |||||||||
| GPL8304_CE_WBGene00004429_A | |||||||||
| GPL8304_CE_WBGene00004429_B | |||||||||
| GPL8673_Y48G8AL_8aP00203 | |||||||||
| GPL8673_Y48G8AL_8aP00225 | |||||||||
| GPL8673_Y48G8AL_8aP00229 | |||||||||
| GPL8673_Y48G8AL_8bP00111 | |||||||||
| GPL8673_Y48G8AL_8bP00209 | |||||||||
| GPL8673_Y48G8AL_8bP00270 | |||||||||
| GPL9450_Y48G8AL.8a | |||||||||
| cea2.d.08110 | |||||||||
| cea2.d.44610 | |||||||||
| Expression_cluster (176) | |||||||||
| Interaction (304) | |||||||||
| Map_info | Map | I | Position | -16.9301 | Error | 0.002606 | |||
| Positive | Positive_clone | Y48G8AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025088 | ||||||||
| WBPaper00028984 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064023 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064934 | |||||||||
| WBPaper00065861 | |||||||||
| Remark | rpl-17 is described as "Orthologous to yeast (S.cerevisiae) ribosomal protein rpl17 using blastP". BlastP with sp|P05740|R171_YEAST gives one hit in the genome with E < 0.01, namely to Y48G8AL.8a/b | Person_evidence | WBPerson567 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
