WormBase Tree Display for Gene: WBGene00004423
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WBGene00004423 | SMap | S_parent | Sequence | F07D10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | rpl-11.2 | |||||||
Sequence_name | F07D10.1 | ||||||||
Molecular_name | F07D10.1 | ||||||||
F07D10.1.1 | |||||||||
CE07033 | |||||||||
Other_name | CELE_F07D10.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | rpl-11.2 | ||||||||
DB_info | Database | AceView | gene | XC860 | |||||
WormQTL | gene | WBGene00004423 | |||||||
WormFlux | gene | WBGene00004423 | |||||||
NDB | locus_tag | CELE_F07D10.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004423|UniProtKB=Q19162 | |||||||
family | PTHR11994 | ||||||||
NCBI | gene | 180535 | |||||||
RefSeq | protein | NM_076012.6 | |||||||
SwissProt | UniProtAcc | Q19162 | |||||||
TREEFAM | TREEFAM_ID | TF300017 | |||||||
UniProt_GCRP | UniProtAcc | Q19162 | |||||||
OMIM | gene | 604175 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rpl | ||||||||
Allele (13) | |||||||||
Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rpl11 using blastP | ||||||||
Strain | WBStrain00003498 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Ortholog (39) | |||||||||
Paralog | WBGene00004422 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | rpl-11.2 encodes a large ribosomal subunit L11 protein; by homology, RPL-11.2 is predicted to function in protein biosynthesis. | Paper_evidence | WBPaper00004424 | |||||
WBPaper00005654 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 25 Jan 2005 00:00:00 | ||||||||
Automated_description | Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytoplasm; nucleus; and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Expressed in embryonic cell; head; posterior gonad arm; and tail. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 7 and T-cell acute lymphoblastic leukemia. Is an ortholog of human RPL11 (ribosomal protein L11). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0111878 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10301) | ||||
DOID:5603 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10301) | ||||||
Molecular_info | Corresponding_CDS | F07D10.1 | |||||||
Corresponding_transcript | F07D10.1.1 | ||||||||
Other_sequence (210) | |||||||||
Associated_feature | WBsf047604 | ||||||||
WBsf655636 | |||||||||
WBsf670168 | |||||||||
WBsf237064 | |||||||||
WBsf237065 | |||||||||
Experimental_info | RNAi_result (12) | ||||||||
Expr_pattern | Chronogram967 | ||||||||
Expr5672 | |||||||||
Expr10953 | |||||||||
Expr13134 | |||||||||
Expr1029222 | |||||||||
Expr1032227 | |||||||||
Expr1147877 | |||||||||
Expr2015439 | |||||||||
Expr2033674 | |||||||||
Drives_construct | WBCnstr00003956 | ||||||||
WBCnstr00035498 | |||||||||
Construct_product | WBCnstr00035498 | ||||||||
Microarray_results (23) | |||||||||
Expression_cluster (237) | |||||||||
Interaction (221) | |||||||||
Map_info | Map | X | Position | -15.9993 | |||||
Positive | Positive_clone | F07D10 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00024924 | ||||||||
WBPaper00030511 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00047582 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00060474 | |||||||||
WBPaper00061791 | |||||||||
WBPaper00063976 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |