WormBase Tree Display for Gene: WBGene00004274
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| WBGene00004274 | SMap | S_parent | Sequence | F53G12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rab-11.1 | Person_evidence | WBPerson451 | |||||
| Sequence_name | F53G12.1 | ||||||||
| Molecular_name | F53G12.1 | ||||||||
| F53G12.1.1 | |||||||||
| CE11006 | |||||||||
| Other_name | rab-11 | Paper_evidence | WBPaper00034709 | ||||||
| CELE_F53G12.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | rab-11.1 | ||||||||
| DB_info | Database | AceView | gene | 1A582 | |||||
| WormQTL | gene | WBGene00004274 | |||||||
| WormFlux | gene | WBGene00004274 | |||||||
| NDB | locus_tag | CELE_F53G12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004274|UniProtKB=O01803 | |||||||
| family | PTHR47979 | ||||||||
| NCBI | gene | 171601 | |||||||
| RefSeq | protein | NM_058274.6 | |||||||
| SwissProt | UniProtAcc | O01803 | |||||||
| TREEFAM | TREEFAM_ID | TF300099 | |||||||
| UniProt_GCRP | UniProtAcc | O01803 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rab | ||||||||
| Allele (49) | |||||||||
| Strain | WBStrain00040386 | ||||||||
| WBStrain00040387 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (37) | |||||||||
| Contained_in_operon | CEOP1957 | ||||||||
| Ortholog (43) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | rab-11.1 encodes a small GTPase homologous to the Rab GTPases that function in endocytosis, membrane fusion, and vesicular trafficking events; RAB-11.1 activity is required for completion of the final stages of cytokinesis during early embryogenesis and for efficient uptake of yolk proteins during oocyte development; RAB-11.1 is also required for normal peripheral localization of nuclei in the synctial germ cell in the ovary and for regulated secretion of CAV-1-containing cortical granules following fertilization; RAB-11.1 localizes to recycling endosomes and to cortical granules. | Paper_evidence | WBPaper00003831 | |||||
| WBPaper00004697 | |||||||||
| WBPaper00027018 | |||||||||
| WBPaper00032152 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Feb 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable GTP binding activity and GTPase activity. Involved in several processes, including eggshell formation; membrane addition at site of mitotic cytokinesis; and vesicle-mediated transport. Located in Golgi trans cisterna membrane; cortical granule; and recycling endosome. Expressed in gonad. Is an ortholog of human RAB11A (RAB11A, member RAS oncogene family). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53G12.1 | |||||||
| Corresponding_transcript | F53G12.1.1 | ||||||||
| Other_sequence | HCC06822_1 | ||||||||
| CB036341.1 | |||||||||
| EX011157.1 | |||||||||
| JI168981.1 | |||||||||
| EX012022.1 | |||||||||
| EX539833.1 | |||||||||
| EX538093.1 | |||||||||
| ACC10580_1 | |||||||||
| HBC01223_1 | |||||||||
| PEC00185_1 | |||||||||
| ES740180.1 | |||||||||
| MC00298 | |||||||||
| PTC00503_1 | |||||||||
| FK670252.1 | |||||||||
| HG09424 | |||||||||
| SC00079 | |||||||||
| PPC00105_1 | |||||||||
| Acan_isotig11281 | |||||||||
| RSC01892_1 | |||||||||
| LSC01103_1 | |||||||||
| ACC08164_1 | |||||||||
| Oden_isotig20947 | |||||||||
| EX565885.1 | |||||||||
| GO252888.1 | |||||||||
| Tcir_isotig29583 | |||||||||
| FC554661.1 | |||||||||
| Tcol_isotig00266 | |||||||||
| PTC00293_1 | |||||||||
| JI210752.1 | |||||||||
| JI469589.1 | |||||||||
| EX552528.1 | |||||||||
| HGC02605_1 | |||||||||
| DN558269.1 | |||||||||
| EX008541.1 | |||||||||
| EX555716.1 | |||||||||
| Tcol_isotig08505 | |||||||||
| JI180844.1 | |||||||||
| CJC14228_1 | |||||||||
| CRC08245_1 | |||||||||
| MIC07666 | |||||||||
| Dviv_isotig06456 | |||||||||
| AE04650 | |||||||||
| JI165838.1 | |||||||||
| GR978276.1 | |||||||||
| GW409090.1 | |||||||||
| PP00564 | |||||||||
| Tcol_isotig17520 | |||||||||
| Acan_isotig09084 | |||||||||
| GR978098.1 | |||||||||
| TSC02094_1 | |||||||||
| XIC01621_1 | |||||||||
| RS06244 | |||||||||
| GW406715.1 | |||||||||
| Tcol_isotig00267 | |||||||||
| Oden_isotig18226 | |||||||||
| PT01015 | |||||||||
| CJC11199_1 | |||||||||
| SC00122 | |||||||||
| Name_isotig02027 | |||||||||
| CJC01409_1 | |||||||||
| Tcol_isotig08503 | |||||||||
| ACC03780_1 | |||||||||
| SS01500 | |||||||||
| DIC01130_1 | |||||||||
| PT01510 | |||||||||
| Acan_isotig10935 | |||||||||
| CJC03008_1 | |||||||||
| DI01916 | |||||||||
| FD517330.1 | |||||||||
| EX555791.1 | |||||||||
| MHC08075_1 | |||||||||
| Tcol_isotig00268 | |||||||||
| MH09727 | |||||||||
| EX557842.1 | |||||||||
| HG02172 | |||||||||
| ES409718.1 | |||||||||
| GR978737.1 | |||||||||
| Dviv_isotig06455 | |||||||||
| SSC00057_1 | |||||||||
| Dviv_isotig06454 | |||||||||
| Tcol_isotig20747 | |||||||||
| AYC04557_1 | |||||||||
| CR02753 | |||||||||
| XI03844 | |||||||||
| NB06520 | |||||||||
| ES743619.1 | |||||||||
| Oden_isotig19767 | |||||||||
| HG09781 | |||||||||
| EX565771.1 | |||||||||
| NB06515 | |||||||||
| BXC03429_1 | |||||||||
| CR11386 | |||||||||
| PSC02242_2 | |||||||||
| JI475488.1 | |||||||||
| TS03515 | |||||||||
| FK809953.1 | |||||||||
| MHC08075_2 | |||||||||
| Dviv_isotig06457 | |||||||||
| EX910197.1 | |||||||||
| CRC07980_1 | |||||||||
| CBC00182_1 | |||||||||
| NB06628 | |||||||||
| ACC25106_1 | |||||||||
| GR978332.1 | |||||||||
| Dviv_isotig06458 | |||||||||
| NBC00269_1 | |||||||||
| Hbac_isotig02455 | |||||||||
| TDC02048_1 | |||||||||
| Acan_isotig12438 | |||||||||
| CSC00114_1 | |||||||||
| HC00631 | |||||||||
| ES740230.1 | |||||||||
| MH09735 | |||||||||
| CRC01108_1 | |||||||||
| CGC00960_1 | |||||||||
| MH01251 | |||||||||
| EX015131.1 | |||||||||
| PE00225 | |||||||||
| EX014514.1 | |||||||||
| FD515594.1 | |||||||||
| ES411455.1 | |||||||||
| HGC08215_1 | |||||||||
| CR07973 | |||||||||
| MCC01084_1 | |||||||||
| Associated_feature | WBsf648892 | ||||||||
| WBsf663857 | |||||||||
| WBsf663858 | |||||||||
| WBsf218867 | |||||||||
| WBsf218868 | |||||||||
| WBsf218869 | |||||||||
| WBsf218870 | |||||||||
| WBsf218871 | |||||||||
| Experimental_info | RNAi_result (31) | ||||||||
| Expr_pattern | Expr4018 | ||||||||
| Expr4949 | |||||||||
| Expr8340 | |||||||||
| Expr8341 | |||||||||
| Expr8956 | |||||||||
| Expr1022979 | |||||||||
| Expr1032113 | |||||||||
| Expr1151979 | |||||||||
| Expr2015214 | |||||||||
| Expr2033448 | |||||||||
| Drives_construct | WBCnstr00012362 | ||||||||
| Construct_product (24) | |||||||||
| Antibody | WBAntibody00001208 | ||||||||
| WBAntibody00001396 | |||||||||
| WBAntibody00001957 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (110) | |||||||||
| Map_info | Map | I | Position | -19.8403 | Error | 0.203444 | |||
| Positive | Positive_clone | F53G12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5490 | |||||||
| Pseudo_map_position | |||||||||
| Reference (42) | |||||||||
| Remark | Sequence connection from [Kuwabara PE] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
