WormBase Tree Display for Gene: WBGene00004228
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WBGene00004228 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | R09H10 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | ptr-14 | Person_evidence | WBPerson349 | |||||
Sequence_name | R09H10.4 | ||||||||
Molecular_name | R09H10.4 | ||||||||
R09H10.4.1 | |||||||||
CE12664 | |||||||||
Other_name | CELE_R09H10.4 | Accession_evidence | NDB | BX284604 | |||||
Public_name | ptr-14 | ||||||||
DB_info | Database | AceView | gene | 4L385 | |||||
WormQTL | gene | WBGene00004228 | |||||||
WormFlux | gene | WBGene00004228 | |||||||
NDB | locus_tag | CELE_R09H10.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004228|UniProtKB=Q21883 | |||||||
family | PTHR10796 | ||||||||
NCBI | gene | 177951 | |||||||
RefSeq | protein | NM_069562.5 | |||||||
TREEFAM | TREEFAM_ID | TF331806 | |||||||
TrEMBL | UniProtAcc | Q21883 | |||||||
UniProt_GCRP | UniProtAcc | Q21883 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ptr | ||||||||
Allele (64) | |||||||||
Strain | WBStrain00047593 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00073209 | ||||||||
00073210 | |||||||||
00073211 | |||||||||
00073212 | |||||||||
00073213 | |||||||||
00073214 | |||||||||
00112518 | |||||||||
00112519 | |||||||||
00112520 | |||||||||
Ortholog (33) | |||||||||
Paralog (30) | |||||||||
Structured_description | Concise_description | ptr-14 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-14is weakly required for normal molting from L4 to adult stages; PTR-14 isalso required for normal growth to full size and locomotion. | Paper_evidence | WBPaper00006465 | |||||
WBPaper00026841 | |||||||||
WBPaper00027263 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 08 Nov 2006 00:00:00 | ||||||||
Automated_description | Predicted to enable transmembrane transporter activity. Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R09H10.4 | |||||||
Corresponding_transcript | R09H10.4.1 | ||||||||
Other_sequence (17) | |||||||||
Associated_feature (15) | |||||||||
Experimental_info | RNAi_result | WBRNAi00034794 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076954 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076922 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00066531 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00051649 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1024743 | ||||||||
Expr1032080 | |||||||||
Expr1155320 | |||||||||
Expr2015157 | |||||||||
Expr2033395 | |||||||||
Drives_construct | WBCnstr00035621 | ||||||||
Construct_product | WBCnstr00035621 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (171) | |||||||||
Interaction | WBInteraction000239614 | ||||||||
WBInteraction000279890 | |||||||||
WBInteraction000468494 | |||||||||
WBInteraction000471924 | |||||||||
WBInteraction000543454 | |||||||||
Map_info | Map | IV | Position | 4.64153 | Error | 0.000219 | |||
Positive | Positive_clone | R09H10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00004265 | ||||||||
WBPaper00006465 | |||||||||
WBPaper00026841 | |||||||||
WBPaper00032230 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064105 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |