WormBase Tree Display for Gene: WBGene00004193
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| WBGene00004193 | Evidence | Paper_evidence | WBPaper00005877 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C15H9 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | prx-3 | |||||||
| Sequence_name | C15H9.8 | ||||||||
| Molecular_name | C15H9.8a | ||||||||
| C15H9.8a.1 | |||||||||
| CE41868 | |||||||||
| C15H9.8b | |||||||||
| CE06836 | |||||||||
| C15H9.8b.1 | |||||||||
| Other_name | CELE_C15H9.8 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | prx-3 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00004193 | |||||
| WormFlux | gene | WBGene00004193 | |||||||
| NDB | locus_tag | CELE_C15H9.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004193|UniProtKB=Q18028 | |||||||
| family | PTHR28080 | ||||||||
| NCBI | gene | 182644 | |||||||
| RefSeq | protein | NM_001392784.1 | |||||||
| NM_001129639.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF352826 | |||||||
| TrEMBL | UniProtAcc | Q18028 | |||||||
| Q18027 | |||||||||
| UniProt_GCRP | UniProtAcc | Q18028 | |||||||
| OMIM | gene | 603164 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 30 Nov 2007 08:46:02 | WBPerson1867 | Event | Acquires_merge | WBGene00015804 | ||||
| Acquires_merge | WBGene00015804 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | prx | ||||||||
| Allele (32) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00059997 | ||||||||
| 00059998 | |||||||||
| 00059999 | |||||||||
| 00060000 | |||||||||
| 00112464 | |||||||||
| 00112465 | |||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | prx-3 is orthologous to the human gene PEROXISOMAL BIOGENESIS FACTOR 3 (PEX3; OMIM:603164), which when mutated leads to Zellweger syndrome of complementation group G. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in protein import into peroxisome membrane. Predicted to be located in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 10A. Is an ortholog of human PEX3 (peroxisomal biogenesis factor 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080484 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8858) | ||||
| DOID:0080377 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8858) | ||||||
| Molecular_info | Corresponding_CDS | C15H9.8a | |||||||
| C15H9.8b | |||||||||
| Corresponding_CDS_history | C15H9.8:wp185 | ||||||||
| Corresponding_transcript | C15H9.8a.1 | ||||||||
| C15H9.8b.1 | |||||||||
| Other_sequence | CJC03027_1 | ||||||||
| CRC00430_1 | |||||||||
| CR08385 | |||||||||
| Tcir_isotig25493 | |||||||||
| CBC11882_1 | |||||||||
| Associated_feature | WBsf654045 | ||||||||
| WBsf237441 | |||||||||
| WBsf237442 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1017263 | ||||||||
| Expr1032053 | |||||||||
| Expr1144693 | |||||||||
| Expr2015126 | |||||||||
| Expr2033364 | |||||||||
| Construct_product | WBCnstr00022628 | ||||||||
| Microarray_results (37) | |||||||||
| Expression_cluster (147) | |||||||||
| Interaction | WBInteraction000036526 | ||||||||
| WBInteraction000181958 | |||||||||
| WBInteraction000280074 | |||||||||
| WBInteraction000325933 | |||||||||
| WBInteraction000346563 | |||||||||
| WBInteraction000383669 | |||||||||
| WBInteraction000575899 | |||||||||
| WBInteraction000585711 | |||||||||
| WBInteraction000586669 | |||||||||
| Map_info | Map | X | Position | -3.70322 | |||||
| Positive | Positive_clone | C15H9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005877 | ||||||||
| WBPaper00006517 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056693 | |||||||||
| WBPaper00059323 | |||||||||
| WBPaper00064552 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
