WormBase Tree Display for Gene: WBGene00004184
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| WBGene00004184 | Evidence | Accession_evidence | EMBL | AF063401 | |||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T19D2 | ||||||
| Identity | Version | 4 | |||||||
| Name | CGC_name | ptp-4A2 | Author_evidence | WBPerson1352 | |||||
| Sequence_name | T19D2.2 | ||||||||
| Molecular_name | T19D2.2 | ||||||||
| T19D2.2.1 | |||||||||
| CE07515 | |||||||||
| T19D2.2.2 | |||||||||
| T19D2.2.3 | |||||||||
| Other_name | prl-1 | ||||||||
| CELE_T19D2.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | ptp-4A2 | ||||||||
| DB_info | Database | AceView | gene | XE560 | |||||
| WormQTL | gene | WBGene00004184 | |||||||
| WormFlux | gene | WBGene00004184 | |||||||
| NDB | locus_tag | CELE_T19D2.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004184|UniProtKB=G5EG43 | |||||||
| family | PTHR23339 | ||||||||
| NCBI | gene | 180677 | |||||||
| RefSeq | protein | NM_001392757.1 | |||||||
| TREEFAM | TREEFAM_ID | TF313384 | |||||||
| TrEMBL | UniProtAcc | G5EG43 | |||||||
| UniProt_GCRP | UniProtAcc | G5EG43 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 06 Sep 2013 11:21:16 | WBPerson2970 | Name_change | Other_name | prl-1 | ||||
| 3 | 06 Mar 2018 14:38:47 | WBPerson4025 | Event | Split_into | WBGene00303102 | ||||
| 4 | 10 Jul 2023 23:47:10 | WBPerson51134 | Name_change | CGC_name | ptp-4A2 | ||||
| Split_into | WBGene00303102 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptp | ||||||||
| Allele (48) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00019469 | ||||||||
| 00019470 | |||||||||
| 00019471 | |||||||||
| 00112427 | |||||||||
| 00112428 | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00000383 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00020444 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable protein tyrosine phosphatase activity. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human PTP4A2 (protein tyrosine phosphatase 4A2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T19D2.2 | |||||||
| Corresponding_CDS_history | T19D2.2a:wp264 | ||||||||
| T19D2.2b:wp264 | |||||||||
| T19D2.2c:wp264 | |||||||||
| Corresponding_transcript | T19D2.2.1 | ||||||||
| T19D2.2.2 | |||||||||
| T19D2.2.3 | |||||||||
| Other_sequence (69) | |||||||||
| Associated_feature | WBsf718556 | ||||||||
| WBsf718557 | |||||||||
| WBsf237231 | |||||||||
| WBsf237232 | |||||||||
| WBsf237233 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1012519 | ||||||||
| Expr1032044 | |||||||||
| Expr1157107 | |||||||||
| Expr2006265 | |||||||||
| Expr2024483 | |||||||||
| Drives_construct | WBCnstr00037930 | ||||||||
| Construct_product | WBCnstr00037930 | ||||||||
| Antibody | WBAntibody00003049 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | X | Position | -9.01614 | Error | 0.069766 | |||
| Positive | Positive_clone | T19D2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00023259 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038792 | |||||||||
| WBPaper00040360 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| The association of T19D2.2 with prl-1 is incorrect | |||||||||
| Method | Gene |
