WormBase Tree Display for Gene: WBGene00004167
expand all nodes | collapse all nodes | view schema
WBGene00004167 | SMap | S_parent | Sequence | Y57A10A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pqn-87 | Person_evidence | WBPerson625 | |||||
Sequence_name | Y57A10A.18 | ||||||||
Molecular_name (16) | |||||||||
Other_name | CELE_Y57A10A.18 | Accession_evidence | NDB | BX284602 | |||||
Public_name | pqn-87 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00004167 | |||||
SignaLink | protein | WBGene00004167 | |||||||
WormFlux | gene | WBGene00004167 | |||||||
NDB | locus_tag | CELE_Y57A10A.18 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004167|UniProtKB=G2HK03 | |||||||
family | PTHR24006 | ||||||||
NCBI | gene | 174861 | |||||||
RefSeq | protein | NM_001381626.2 | |||||||
NM_064193.4 | |||||||||
NM_001267406.4 | |||||||||
NM_001267407.4 | |||||||||
NM_001381625.2 | |||||||||
TREEFAM | TREEFAM_ID | TF350313 | |||||||
TrEMBL | UniProtAcc | K8ESL3 | |||||||
Q9U207 | |||||||||
G2HK03 | |||||||||
A5PEX6 | |||||||||
G2HK02 | |||||||||
UniProt_GCRP | UniProtAcc | G2HK03 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pqn | ||||||||
Allele (383) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00008938 | ||||||||
00112414 | |||||||||
00112415 | |||||||||
Contained_in_operon | CEOP2688 | ||||||||
Ortholog (28) | |||||||||
Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
WBPaper00012788 | |||||||||
WBPaper00012830 | |||||||||
WBPaper00012882 | |||||||||
WBPaper00012897 | |||||||||
WBPaper00013003 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in AVK; PDB; RIS; and germ line based on proteomic; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including glp-1; daf-12; and let-7 based on microarray; RNA-seq; tiling array; and proteomic studies. Is affected by eight chemicals including rotenone; Tunicamycin; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y57A10A.18a | |||||||
Y57A10A.18b | |||||||||
Y57A10A.18c | |||||||||
Y57A10A.18d | |||||||||
Y57A10A.18e | |||||||||
Corresponding_CDS_history | Y57A10A.18:wp57 | ||||||||
Y57A10A.18:wp109 | |||||||||
Corresponding_transcript | Y57A10A.18a.1 | ||||||||
Y57A10A.18a.2 | |||||||||
Y57A10A.18b.1 | |||||||||
Y57A10A.18c.1 | |||||||||
Y57A10A.18d.1 | |||||||||
Y57A10A.18e.1 | |||||||||
Other_sequence (13) | |||||||||
Associated_feature (28) | |||||||||
Experimental_info | RNAi_result | WBRNAi00057619 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00057620 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1017119 | ||||||||
Expr1032032 | |||||||||
Expr1161031 | |||||||||
Expr2015078 | |||||||||
Expr2033314 | |||||||||
Microarray_results (25) | |||||||||
Expression_cluster (135) | |||||||||
Interaction (27) | |||||||||
Map_info | Map | II | Position | 7.03215 | Error | 0.019627 | |||
Positive | Positive_clone | Y57A10A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |