WormBase Tree Display for Gene: WBGene00004160

WBGene00004160 SMap: S_parent: Sequence: Y105C5A
  Identity: Version: 1
    Name: CGC_name: pqn-79 Person_evidence: WBPerson625
      Sequence_name: Y105C5A.6
      Molecular_name: Y105C5A.6
        Y105C5A.6.1
        CE23185
      Other_name: CELE_Y105C5A.6 Accession_evidence: NDB BX284604
      Public_name: pqn-79
    DB_info: Database: AceView gene 4Q357
        WormFlux gene WBGene00004160
        NDB locus_tag CELE_Y105C5A.6
        NCBI gene 190872
        RefSeq protein NM_070474.1
        TREEFAM TREEFAM_ID TF315535
        TrEMBL UniProtAcc G5ECQ7
        UniProt_GCRP UniProtAcc G5ECQ7
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pqn
    Allele (13)
    RNASeq_FPKM (74)
    Ortholog (26)
    Paralog (20)
    Structured_description: Concise_description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). Paper_evidence: WBPaper00005068
            WBPaper00012788
            WBPaper00012830
            WBPaper00012882
            WBPaper00012897
            WBPaper00013003
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Is affected by several genes including daf-2; pmk-1; and clk-1 based on tiling array; microarray; and RNA-seq studies. Is affected by ten chemicals including aldicarb; Neurotoxins; and Cry5B based on microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1096) and Protein of unknown function DUF1096. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y105C5A.6
    Corresponding_transcript: Y105C5A.6.1
    Other_sequence: JI179059.1
      JI174243.1
  Experimental_info: RNAi_result: WBRNAi00093067 Inferred_automatically: RNAi_primary
      WBRNAi00093068 Inferred_automatically: RNAi_primary
      WBRNAi00093062 Inferred_automatically: RNAi_primary
      WBRNAi00093073 Inferred_automatically: RNAi_primary
      WBRNAi00093069 Inferred_automatically: RNAi_primary
      WBRNAi00093063 Inferred_automatically: RNAi_primary
      WBRNAi00021413 Inferred_automatically: RNAi_primary
      WBRNAi00019834 Inferred_automatically: RNAi_primary
      WBRNAi00019833 Inferred_automatically: RNAi_primary
      WBRNAi00055183 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1158720
    Drives_construct: WBCnstr00035660
    Construct_product: WBCnstr00035660
    Microarray_results: SMD_Y105C5A.E
      172552_x_at
      172573_x_at
      172585_x_at
      172605_x_at
      GPL3518_CE23185
      GPL8304_CE_WBGene00004160_B
      GPL8673_Y105C5A_6P00870
    Expression_cluster (40)
    Interaction: WBInteraction000005818
      WBInteraction000502260
      WBInteraction000503316
  Map_info: Map: IV Position: 14.2323
    Positive: Positive_clone: Y105C5A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene