WormBase Tree Display for Gene: WBGene00004144
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| WBGene00004144 | SMap | S_parent | Sequence | R11G11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | srlf-35 | Person_evidence | WBPerson260 | |||||
| Sequence_name | R11G11.7 | ||||||||
| Molecular_name | R11G11.7 | ||||||||
| R11G11.7.1 | |||||||||
| CE12752 | |||||||||
| Other_name | pqn-60 | Person_evidence | WBPerson260 | ||||||
| CELE_R11G11.7 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | srlf-35 | ||||||||
| DB_info | Database | AceView | gene | 5A979 | |||||
| WormQTL | gene | WBGene00004144 | |||||||
| WormFlux | gene | WBGene00004144 | |||||||
| NDB | locus_tag | CELE_R11G11.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004144|UniProtKB=O16948 | |||||||
| family | PTHR21593 | ||||||||
| NCBI | gene | 187826 | |||||||
| RefSeq | protein | NM_070824.2 | |||||||
| TREEFAM | TREEFAM_ID | TF316074 | |||||||
| TrEMBL | UniProtAcc | O16948 | |||||||
| UniProt_GCRP | UniProtAcc | O16948 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 02 Mar 2022 23:57:00 | WBPerson51134 | Name_change | CGC_name | srlf-35 | ||||
| Other_name | pqn-60 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srlf | ||||||||
| Allele | WBVar01499528 | ||||||||
| WBVar01499167 | |||||||||
| WBVar02122833 | |||||||||
| WBVar01499740 | |||||||||
| WBVar01518953 | |||||||||
| WBVar01518954 | |||||||||
| WBVar01518955 | |||||||||
| WBVar01518956 | |||||||||
| WBVar01518957 | |||||||||
| WBVar01518958 | |||||||||
| WBVar01518959 | |||||||||
| WBVar01495344 | |||||||||
| WBVar01518960 | |||||||||
| WBVar01518961 | |||||||||
| WBVar01518962 | |||||||||
| WBVar01518963 | |||||||||
| WBVar01518964 | |||||||||
| WBVar01518965 | |||||||||
| WBVar01518966 | |||||||||
| WBVar01518967 | |||||||||
| WBVar01498849 | |||||||||
| WBVar01518968 | |||||||||
| WBVar00980005 | |||||||||
| WBVar01518969 | |||||||||
| WBVar01498850 | |||||||||
| WBVar00980006 | |||||||||
| WBVar00980007 | |||||||||
| WBVar00980008 | |||||||||
| WBVar00980009 | |||||||||
| WBVar01499775 | |||||||||
| WBVar00980010 | |||||||||
| WBVar01773859 | |||||||||
| WBVar02082600 | |||||||||
| WBVar02120511 | |||||||||
| WBVar01498906 | |||||||||
| WBVar00447924 | |||||||||
| WBVar01499674 | |||||||||
| WBVar01499675 | |||||||||
| WBVar01500066 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00029013 | ||||||||
| 00029014 | |||||||||
| Ortholog (27) | |||||||||
| Paralog (39) | |||||||||
| Structured_description | Concise_description | pqn-60 encodes a 154-residue, glutamine/asparagine (Q/N)-rich('prion'-like) protein, predicted to have coiled-coil structure, withmany paralogs in nematodes but no obvious non-nematode orthologs; PQN-60inhibits CEP-1- and HUS-1-dependent germline apoptosis, as do BMK-1,RAD-50, and RAD-51. | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| WBPaper00023909 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 21 Apr 2007 00:00:00 | ||||||||
| Automated_description | Enriched in ABaraapapaa; ABaraapppaa; arcade cell; and pharynx based on microarray and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and tiling array studies. Is affected by twenty chemicals including methylmercuric chloride; Mercuric Chloride; and multi-walled carbon nanotube based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: SXP/RAL-2 family protein Ani s 5-like, metal-binding domain and SXP/RAL-2 family protein Ani s 5-like, cation-binding domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R11G11.7 | |||||||
| Corresponding_transcript | R11G11.7.1 | ||||||||
| Associated_feature | WBsf979050 | ||||||||
| WBsf231344 | |||||||||
| WBsf231345 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00064188 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00051817 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00064214 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034873 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017776 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014988 | ||||||||
| Expr1155477 | |||||||||
| Expr2015061 | |||||||||
| Expr2033296 | |||||||||
| Drives_construct | WBCnstr00035672 | ||||||||
| Construct_product | WBCnstr00035672 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (214) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | V | Position | -19.9855 | |||||
| Positive | Positive_clone | R11G11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
