WormBase Tree Display for Gene: WBGene00004136
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| WBGene00004136 | SMap | S_parent | Sequence | K11D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pqn-51 | Person_evidence | WBPerson625 | |||||
| Sequence_name | K11D12.2 | ||||||||
| Molecular_name | K11D12.2 | ||||||||
| K11D12.2.1 | |||||||||
| CE12128 | |||||||||
| K11D12.2.2 | |||||||||
| Other_name | CELE_K11D12.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pqn-51 | ||||||||
| DB_info | Database | AceView | gene | 5F529 | |||||
| WormQTL | gene | WBGene00004136 | |||||||
| WormFlux | gene | WBGene00004136 | |||||||
| NDB | locus_tag | CELE_K11D12.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004136|UniProtKB=O44625 | |||||||
| family | PTHR12694 | ||||||||
| NCBI | gene | 178893 | |||||||
| RefSeq | protein | NM_001392508.1 | |||||||
| TREEFAM | TREEFAM_ID | TF350445 | |||||||
| TrEMBL | UniProtAcc | O44625 | |||||||
| UniProt_GCRP | UniProtAcc | O44625 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 02 Mar 2018 11:09:16 | WBPerson4025 | Event | Split_into | WBGene00303069 | ||||
| Split_into | WBGene00303069 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqn | ||||||||
| Allele (64) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00032985 | ||||||||
| 00032986 | |||||||||
| 00032987 | |||||||||
| 00032988 | |||||||||
| 00112403 | |||||||||
| 00112404 | |||||||||
| Contained_in_operon | CEOP5564 | ||||||||
| Ortholog (41) | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIA complex. Is an ortholog of human GTF2A1 (general transcription factor IIA subunit 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K11D12.2 | |||||||
| Corresponding_CDS_history | K11D12.2a:wp264 | ||||||||
| K11D12.2b:wp264 | |||||||||
| Corresponding_transcript | K11D12.2.1 | ||||||||
| K11D12.2.2 | |||||||||
| Other_sequence (59) | |||||||||
| Associated_feature | WBsf646792 | ||||||||
| WBsf646793 | |||||||||
| WBsf646794 | |||||||||
| WBsf981933 | |||||||||
| WBsf999927 | |||||||||
| WBsf1019583 | |||||||||
| WBsf231723 | |||||||||
| WBsf231724 | |||||||||
| Transcription_factor | WBTranscriptionFactor000244 | ||||||||
| WBTranscriptionFactor000326 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050587 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1013127 | ||||||||
| Expr1032011 | |||||||||
| Expr1154294 | |||||||||
| Expr2015056 | |||||||||
| Expr2033291 | |||||||||
| Drives_construct | WBCnstr00035676 | ||||||||
| Construct_product | WBCnstr00035676 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (101) | |||||||||
| Map_info | Map | V | Position | -3.57074 | Error | 0.003288 | |||
| Positive | Positive_clone | K11D12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00029038 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
