WormBase Tree Display for Gene: WBGene00004122

WBGene00004122 SMap: S_parent: Sequence: F35D11
  Identity: Version: 1
    Name: CGC_name: pqn-35 Person_evidence: WBPerson625
      Sequence_name: F35D11.2
      Molecular_name: F35D11.2a
        F35D11.2a.1
        CE32647
        F35D11.2b
        CE31802
        F35D11.2a.2
        F35D11.2a.3
        F35D11.2b.1
      Other_name: CELE_F35D11.2 Accession_evidence: NDB BX284602
      Public_name: pqn-35
    DB_info: Database: AceView gene 2E915
        WormQTL gene WBGene00004122
        WormFlux gene WBGene00004122
        NDB locus_tag CELE_F35D11.2
        NCBI gene 173800
        RefSeq protein NM_001381396.1
            NM_001393052.1
        TREEFAM TREEFAM_ID TF350187
        TrEMBL UniProtAcc Q20040
            Q8MQ61
        UniProt_GCRP UniProtAcc Q8MQ61
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pqn
    Allele: WBVar01499702
      WBVar01498435
      WBVar02152008
      WBVar01559432
      WBVar01559433
      WBVar01559434
      WBVar01400071
      WBVar01559435
      WBVar01559436
      WBVar02017873
      WBVar00259707
      WBVar00259708
      WBVar00259709
      WBVar01305914
      WBVar01305919
      WBVar01603735
      WBVar01239389
      WBVar01792108
      WBVar01372078
      WBVar00726965
      WBVar00726966
      WBVar00726967
      WBVar01372089
      WBVar00726968
      WBVar00726969
      WBVar00726970
      WBVar00726971
      WBVar00726972
      WBVar00726973
      WBVar00726974
      WBVar00726975
      WBVar00726976
      WBVar00726977
      WBVar00726978
      WBVar00726979
      WBVar00726980
      WBVar00726981
      WBVar00726982
      WBVar00726983
      WBVar00726984
      WBVar00726985
      WBVar00726986
      WBVar00726987
      WBVar00726988
      WBVar00726989
      WBVar00726990
      WBVar00726991
      WBVar00726992
      WBVar00726993
      WBVar00726994
      WBVar00726995
      WBVar00726996
      WBVar00726997
      WBVar00726998
      WBVar00726999
      WBVar00727000
      WBVar00727001
      WBVar00727002
      WBVar00727003
      WBVar01498714
      WBVar00727004
      WBVar01949031
      WBVar00727005
      WBVar01949032
      WBVar00727006
      WBVar00727007
      WBVar00257011
      WBVar00727008
      WBVar00727009
      WBVar00727010
      WBVar00727011
      WBVar00727012
      WBVar00727013
      WBVar00727014
      WBVar00727015
      WBVar01959965
      WBVar00727016
      WBVar00727017
      WBVar00171672
      WBVar00171673
      WBVar01499464
      WBVar00727018
      WBVar00727019
      WBVar00171674
      WBVar02151742
      WBVar00727020
      WBVar00727021
      WBVar00727022
      WBVar00727023
      WBVar00727024
      WBVar00727025
      WBVar00727026
      WBVar00727027
      WBVar00727028
      WBVar00727029
      WBVar00727030
      WBVar00727031
      WBVar00727032
      WBVar00727033
      WBVar00727034
      WBVar00727035
      WBVar01783118
      WBVar00727036
      WBVar00727037
      WBVar00727038
      WBVar00364412
      WBVar00103635
      WBVar01248640
      WBVar00727039
      WBVar00364413
      WBVar00727040
      WBVar00364414
      WBVar00103636
      WBVar00727041
      WBVar00364415
      WBVar00727042
      WBVar00364416
      WBVar00364417
      WBVar00727043
      WBVar00364418
      WBVar00364419
      WBVar00364420
      WBVar00364421
      WBVar00364422
      WBVar00364423
      WBVar01477415
      WBVar00364424
      WBVar01477416
      WBVar00364425
      WBVar01477417
      WBVar00364426
      WBVar00364427
      WBVar00364428
      WBVar00364429
      WBVar00364430
      WBVar00364431
      WBVar00364432
      WBVar00234481
      WBVar00364433
      WBVar00276485
      WBVar00364434
      WBVar02144048
      WBVar00364435
      WBVar00364436
      WBVar00364437
      WBVar00364438
      WBVar00364439
      WBVar01982413
      WBVar01982414
      WBVar00364440
      WBVar00364441
      WBVar00364442
    RNASeq_FPKM (74)
    GO_annotation: 00066893
    Ortholog (23)
    Structured_description: Concise_description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). Paper_evidence: WBPaper00005068
            WBPaper00012788
            WBPaper00012830
            WBPaper00012882
            WBPaper00012897
            WBPaper00013003
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be located in membrane. Expressed in pharyngeal muscle cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F35D11.2a
      F35D11.2b
    Corresponding_CDS_history: F35D11.2a:wp88
    Corresponding_transcript: F35D11.2a.1
      F35D11.2a.2
      F35D11.2a.3
      F35D11.2b.1
    Other_sequence (15)
    Associated_feature (13)
  Experimental_info: RNAi_result: WBRNAi00046319 Inferred_automatically: RNAi_primary
      WBRNAi00103327 Inferred_automatically: RNAi_primary
      WBRNAi00014317 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr2130
      Expr1021054
      Expr1031998
      Expr1150208
      Expr2015048
      Expr2033283
    Drives_construct: WBCnstr00035681
    Construct_product: WBCnstr00035681
    Microarray_results (23)
    Expression_cluster: WBPaper00024505:pharyngeal_enriched
      WBPaper00024970:GABAergic_neuron_specific
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044037:eat-2_upregulated
      WBPaper00044260:1-methylnicotinamide_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045316:prg-1_upregulated_L2
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00051311:VGLN-1-interacting
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053020:OrsayVirus-infection_downregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055049:S.gordonii_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056284:ints-1(RNAi)_downregulated
      WBPaper00056284:ints-11(RNAi)_downregulated
      WBPaper00056330:glycine_downregulated
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057154:HeatShock_downregulated_miRNA-target
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058948:npr-8(ok1439)_downregulated_OP50
      WBPaper00058948:npr-8(ok1439)_downregulated_PA14
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059566:wdr-23(mac32)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00059763:neuron_expressed
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(et18)_downregulated
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061007:X.citri_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:AMsh
      WBPaper00061340:Anterior_arcade_cell
      WBPaper00061340:ant_arc_V
      WBPaper00061340:Arcade_cell_anterior_and_posterior
      WBPaper00061340:CEPsh
      WBPaper00061340:Excretory_duct_and_pore
      WBPaper00061340:g2
      WBPaper00061340:hyp1V_and_ant_arc_V
      WBPaper00061340:hyp1_hyp2
      WBPaper00061340:ILsh_OLLsh_OLQsh
      WBPaper00061340:Posterior_arcade_cell
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061527:sol-1-jnk-1_18695
      WBPaper00061651:AMso_enriched
      WBPaper00061651:CEPsh_enriched
      WBPaper00061651:PHsh_enriched
      WBPaper00061651:PHso_enriched
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064156:lipl-4(overexpress)_upregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065623:162
      WBPaper00065841:5_0
      WBPaper00065841:5_1
      WBPaper00065841:21_0
      WBPaper00065841:21_1
      WBPaper00065841:23_0
      WBPaper00065841:24_0
      WBPaper00065841:24_1
      WBPaper00065841:26_2
      WBPaper00065841:34_0
      WBPaper00065841:34_1
      WBPaper00065841:37_0
      WBPaper00065841:64_0
      WBPaper00065841:78_0
      WBPaper00065841:79_2
      WBPaper00065841:82_1
      WBPaper00065841:141_0
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_20
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031532:Larva_Pan_Neuronal_Depleted
      WBPaper00032948:FedUp
      WBPaper00035227:heat_shock_regulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00037113:CPF_16C_up-regulated
      WBPaper00038304:octr-1_regulated
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040821:Au-NP_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00040963:TA300_up
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00045673:colistin_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046083:oga-1(ok1207)_OP50_downregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:Cluster_B
    Interaction (17)
  Map_info: Map: II Position: -3.81187 Error: 0.003663
    Positive: Positive_clone: F35D11 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026929
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene