WormBase Tree Display for Gene: WBGene00004119
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WBGene00004119 | SMap | S_parent | Sequence | F21C10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pqn-31 | Person_evidence | WBPerson625 | |||||
Sequence_name | F21C10.8 | ||||||||
Molecular_name | F21C10.8a | ||||||||
F21C10.8a.1 | |||||||||
CE07123 | |||||||||
F21C10.8b | |||||||||
CE35283 | |||||||||
F21C10.8b.1 | |||||||||
Other_name | CELE_F21C10.8 | Accession_evidence | NDB | BX284605 | |||||
Public_name | pqn-31 | ||||||||
DB_info | Database | AceView | gene | 5J591 | |||||
WormQTL | gene | WBGene00004119 | |||||||
WormFlux | gene | WBGene00004119 | |||||||
NDB | locus_tag | CELE_F21C10.8 | |||||||
NCBI | gene | 179291 | |||||||
RefSeq | protein | NM_001028658.5 | |||||||
NM_001028659.5 | |||||||||
TREEFAM | TREEFAM_ID | TF321329 | |||||||
TrEMBL | UniProtAcc | Q7JNW7 | |||||||
H2KY72 | |||||||||
UniProt_GCRP | UniProtAcc | H2KY72 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pqn | ||||||||
Allele (22) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00068618 | Caenorhabditis remanei | From_analysis | OMA | |||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00073302 | Caenorhabditis remanei | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00038457 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00126991 | Caenorhabditis japonica | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00190296 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00132744 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
CSP26.g5536 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g4567 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g18210 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP32.g10278 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g13113 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g8380 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g348 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-pqn-31 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold630.g16858 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00279.g8568 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_19104 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_017201 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g00015 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Sp34_50236700 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrV_pilon.g15170 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog | WBGene00004123 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
WBPaper00012788 | |||||||||
WBPaper00012830 | |||||||||
WBPaper00012882 | |||||||||
WBPaper00012897 | |||||||||
WBPaper00013003 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in head mesodermal cell and pharynx based on RNA-seq studies. Is affected by several genes including daf-2; glp-1; and dpy-10 based on microarray; RNA-seq; and tiling array studies. Is affected by twenty-one chemicals including Ethanol; methylmercuric chloride; and rotenone based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F21C10.8a | |||||||
F21C10.8b | |||||||||
Corresponding_transcript | F21C10.8a.1 | ||||||||
F21C10.8b.1 | |||||||||
Other_sequence (11) | |||||||||
Associated_feature | WBsf1000818 | ||||||||
WBsf1000819 | |||||||||
WBsf1020133 | |||||||||
WBsf232211 | |||||||||
Experimental_info | RNAi_result | WBRNAi00045178 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00031206 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00013664 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1020920 | ||||||||
Expr1149117 | |||||||||
Expr2015046 | |||||||||
Expr2033281 | |||||||||
Drives_construct | WBCnstr00035682 | ||||||||
Construct_product | WBCnstr00035682 | ||||||||
Microarray_results (23) | |||||||||
Expression_cluster (254) | |||||||||
Interaction | WBInteraction000303692 | ||||||||
WBInteraction000341945 | |||||||||
WBInteraction000547861 | |||||||||
WBInteraction000547862 | |||||||||
WBInteraction000549444 | |||||||||
WBInteraction000549454 | |||||||||
Map_info | Map | V | Position | 1.9399 | Error | 0.002842 | |||
Positive | Positive_clone | F21C10 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00058665 | ||||||||
WBPaper00064648 | |||||||||
WBPaper00065331 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |