WormBase Tree Display for Gene: WBGene00004115
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| WBGene00004115 | SMap | S_parent | Sequence | DY3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pqn-26 | Person_evidence | WBPerson625 | |||||
| Sequence_name | DY3.5 | ||||||||
| Molecular_name | DY3.5 | ||||||||
| DY3.5.1 | |||||||||
| CE43131 | |||||||||
| Other_name | CELE_DY3.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | pqn-26 | ||||||||
| DB_info | Database | AceView | gene | 1J348 | |||||
| WormQTL | gene | WBGene00004115 | |||||||
| WormFlux | gene | WBGene00004115 | |||||||
| NDB | locus_tag | CELE_DY3.5 | |||||||
| NCBI | gene | 183974 | |||||||
| RefSeq | protein | NM_059974.5 | |||||||
| TREEFAM | TREEFAM_ID | TF350713 | |||||||
| TrEMBL | UniProtAcc | O45322 | |||||||
| UniProt_GCRP | UniProtAcc | O45322 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqn | ||||||||
| Allele (67) | |||||||||
| Strain | WBStrain00037608 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00004120 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in GABAergic neurons; arcade cell; head mesodermal cell; and pharynx based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twenty-two chemicals including D-glucose; sesamin; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Thioredoxin-like superfamily. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | DY3.5 | |||||||
| Corresponding_CDS_history | DY3.5:wp192 | ||||||||
| DY3.5:wp196 | |||||||||
| Corresponding_transcript | DY3.5.1 | ||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf649418 | ||||||||
| WBsf979049 | |||||||||
| WBsf984504 | |||||||||
| WBsf1010272 | |||||||||
| WBsf1010273 | |||||||||
| WBsf1010274 | |||||||||
| WBsf219982 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00070700 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043552 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070699 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003302 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027942 | ||||||||
| Expr1031992 | |||||||||
| Expr1147544 | |||||||||
| Expr2015042 | |||||||||
| Expr2033277 | |||||||||
| Drives_construct | WBCnstr00035685 | ||||||||
| Construct_product | WBCnstr00035685 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (194) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | I | Position | 3.10357 | Error | 0.004253 | |||
| Positive | Positive_clone | DY3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00064648 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
