WormBase Tree Display for Gene: WBGene00004120
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| WBGene00004120 | SMap | S_parent | Sequence | F29C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pqn-32 | Person_evidence | WBPerson625 | |||||
| Sequence_name | F29C12.1 | ||||||||
| Molecular_name | F29C12.1a | ||||||||
| F29C12.1a.1 | |||||||||
| CE19820 | |||||||||
| F29C12.1b | |||||||||
| CE37902 | |||||||||
| F29C12.1b.1 | |||||||||
| Other_name | CELE_F29C12.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | pqn-32 | ||||||||
| DB_info | Database | AceView | gene | 2N399 | |||||
| WormQTL | gene | WBGene00004120 | |||||||
| WormFlux | gene | WBGene00004120 | |||||||
| NDB | locus_tag | CELE_F29C12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004120|UniProtKB=Q9XV50 | |||||||
| family | PTHR21679 | ||||||||
| NCBI | gene | 174955 | |||||||
| RefSeq | protein | NM_001026957.7 | |||||||
| NM_001026956.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF350713 | |||||||
| TrEMBL | UniProtAcc | Q9XV50 | |||||||
| Q5FC36 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9XV50 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqn | ||||||||
| Allele (49) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (27) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in hypodermis; interfacial epithelial cell; intestine; and sensory neurons based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twenty-nine chemicals including hydrogen sulfide; Nitric Oxide; and methylmercury hydroxide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: DB module and Domain of unknown function DB. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F29C12.1a | |||||||
| F29C12.1b | |||||||||
| Corresponding_transcript | F29C12.1a.1 | ||||||||
| F29C12.1b.1 | |||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf644792 | ||||||||
| WBsf654921 | |||||||||
| WBsf654922 | |||||||||
| WBsf658342 | |||||||||
| WBsf990328 | |||||||||
| WBsf1013566 | |||||||||
| WBsf222328 | |||||||||
| WBsf222329 | |||||||||
| WBsf222330 | |||||||||
| WBsf222331 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045907 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014099 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023612 | ||||||||
| Expr1031996 | |||||||||
| Expr1149810 | |||||||||
| Expr2015047 | |||||||||
| Expr2033282 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (274) | |||||||||
| Interaction (177) | |||||||||
| Map_info | Map | II | Position | 14.3984 | Error | 0.039877 | |||
| Positive | Positive_clone | F29C12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00064306 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
