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WormBase Tree Display for Gene: WBGene00004099

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Name Class

WBGene00004099SMapS_parentSequenceC03A7
IdentityVersion2
NameCGC_nameabu-15Paper_evidenceWBPaper00038304
Person_evidenceWBPerson3
Sequence_nameC03A7.4
Molecular_nameC03A7.4
C03A7.4.1
CE07862
Other_namepqn-5Person_evidenceWBPerson265
CELE_C03A7.4Accession_evidenceNDBBX284605
Public_nameabu-15
DB_infoDatabase (10)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
212 Apr 2011 11:48:32WBPerson2970Name_changeCGC_nameabu-15
Other_namepqn-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classabu
Allele (23)
StrainWBStrain00037133
RNASeq_FPKM (74)
GO_annotation00028183
00028184
OrthologWBGene00052723Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00030438Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WBGene00030440Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00052721Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00139560Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WBGene00149499Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WBGene00133455Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00136574Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WBGene00122553Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WBGene00133279Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00150272Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00163685Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00127936Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WBGene00052727Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00052720Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00124502Caenorhabditis japonicaFrom_analysisTreeFam
CSP26.g20251Caenorhabditis zanzibariFrom_analysisWormBase-Compara
Sp34_50190400Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50190800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g14180Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (30)
Structured_descriptionConcise_descriptionThe protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).Paper_evidenceWBPaper00005068
WBPaper00012788
WBPaper00012830
WBPaper00012882
WBPaper00012897
WBPaper00013003
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionInvolved in endoplasmic reticulum unfolded protein response and pharynx development. Expressed in pharyngeal muscle cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC03A7.4
Corresponding_transcriptC03A7.4.1
Associated_featureWBsf999941
WBsf1019592
WBsf1019593
WBsf231734
Experimental_infoRNAi_result (28)
Expr_patternExpr12494
Expr1028993
Expr1143588
Expr2009108
Expr2027344
Drives_constructWBCnstr00021223
WBCnstr00037942
Construct_productWBCnstr00037942
Microarray_results (30)
Expression_cluster (196)
Interaction (127)
WBProcessWBbiopr:00000046
WBbiopr:00000079
Map_infoMapVPosition-2.43732Error0.004959
PositivePositive_cloneC03A7Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00026929
WBPaper00032003
WBPaper00038304
WBPaper00040821
WBPaper00045541
WBPaper00045960
WBPaper00055090
WBPaper00064648
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene