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WormBase Tree Display for Gene: WBGene00003997

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Name Class

WBGene00003997SMapS_parentSequenceCHROMOSOME_X
IdentityVersion1
NameCGC_namepgp-3Person_evidenceWBPerson490
Sequence_nameZK455.7
Molecular_nameZK455.7
ZK455.7.1
CE03818
Other_namecepgpCAccession_evidenceEMBLX65055
CELE_ZK455.7Accession_evidenceNDBBX284606
Public_namepgp-3
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:33WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpgp
Allele (77)
Legacy_information[C.elegansII] pk18 : deletion derived from pk30tci, increased sensitivity to colchicine and to chloroquine; gross phenotype WT. Cloned: encodes 1254 aa P-glycoprotein, 61-65% identical to mammalian P-glycoproteins. Transcripts present throughout development; pgp-1:lacZ expressed in intestine, throughout development. Tagged PGP-3 detected in apical membranes of gut and of excretory cell. [Broeks et al. 1995; NL]
StrainWBStrain00028887
WBStrain00028888
WBStrain00028891
WBStrain00033025
WBStrain00037266
WBStrain00004731
RNASeq_FPKM (74)
GO_annotation (21)
OrthologWBGene00023572Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00023573Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00023575Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00023577Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00026762Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00028069Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00033821Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00034135Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00034271Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00037005Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00037006Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00037161Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00037162Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00037165Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00161154Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00058300Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00123145Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00114765Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00231570Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2827Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12439Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g13424Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g3644Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7230Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18762Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15828Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10058Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2856Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17072Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g2793Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28787Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12630Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00158.g5875Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_X.g23203Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold31.g135Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00458.g11649Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01130Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023779Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02254Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11074Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g12160Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g17150Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18578Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18582Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19718Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19721Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g5577Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0087600Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_X0087800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_X0087900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20058Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00258292Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000001692Saccharomyces cerevisiaeFrom_analysisInparanoid
OrthoInspector
PhylomeDB
SonicParanoid
FB:FBgn0004513Drosophila melanogasterFrom_analysisOMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-050517-14Danio rerioFrom_analysisOMA
OrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-050517-13Danio rerioFrom_analysisOMA
OrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-030131-6414Danio rerioFrom_analysisOMA
OrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-080204-52Danio rerioFrom_analysisOMA
OrthoFinder
PhylomeDB
HGNC:40Homo sapiensFrom_analysisOMA
OrthoFinder
PhylomeDB
HGNC:45Homo sapiensFrom_analysisOMA
OrthoFinder
PhylomeDB
HGNC:42Homo sapiensFrom_analysisOMA
OrthoFinder
PhylomeDB
HGNC:46Homo sapiensFrom_analysisOMA
OrthoFinder
PhylomeDB
MGI:97568Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
MGI:97569Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
MGI:97570Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
MGI:1351619Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
MGI:1924956Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
RGD:3318Rattus norvegicusFrom_analysisOMA
OrthoFinder
PhylomeDB
RGD:620248Rattus norvegicusFrom_analysisOMA
OrthoFinder
PhylomeDB
RGD:619930Rattus norvegicusFrom_analysisOMA
OrthoFinder
PhylomeDB
RGD:1566342Rattus norvegicusFrom_analysisOMA
OrthoFinder
PhylomeDB
Paralog (23)
Structured_descriptionConcise_descriptionpgp-3 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily; with PGP-1, PGP-3 is required for defense against the pathogenic Pseudomonas aeruginosa strain PA14, and may facilitate ATP-dependent efflux of the toxic phenazine compounds produced by the bacteria; PGP-3 is also required for resistance to colchicine and chloroquine; PGP-3 is expressed in the apical membranes of the excretory cell and the intestinal cells.Paper_evidenceWBPaper00002180
WBPaper00003366
WBPaper00003925
WBPaper00004651
WBPaper00005654
Curator_confirmedWBPerson1843
Date_last_updated03 Apr 2014 00:00:00
Automated_descriptionPredicted to enable ATPase-coupled transmembrane transporter activity and efflux transmembrane transporter activity. Involved in defense response to Gram-negative bacterium; innate immune response; and stress response to cadmium ion. Located in apical plasma membrane. Expressed in excretory canal; excretory cell; intestinal cell; intestine; and pharynx. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); and intrahepatic cholestasis (multiple). Is an ortholog of several human genes including ABCB1 (ATP binding cassette subfamily B member 1); ABCB11 (ATP binding cassette subfamily B member 11); and ABCB4 (ATP binding cassette subfamily B member 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (41)
Molecular_infoCorresponding_CDSZK455.7
Corresponding_transcriptZK455.7.1
Other_sequence (21)
Associated_featureWBsf1006975
Experimental_infoRNAi_resultWBRNAi00059437Inferred_automaticallyRNAi_primary
WBRNAi00022018Inferred_automaticallyRNAi_primary
WBRNAi00014821Inferred_automaticallyRNAi_primary
WBRNAi00001488Inferred_automaticallyRNAi_primary
Expr_pattern (13)
Drives_constructWBCnstr00002142
WBCnstr00010331
WBCnstr00011338
WBCnstr00011339
WBCnstr00012125
WBCnstr00012126
WBCnstr00012634
WBCnstr00015310
WBCnstr00035753
Construct_productWBCnstr00012634
WBCnstr00014565
WBCnstr00014566
WBCnstr00035753
AntibodyWBAntibody00000095
Microarray_results (17)
Expression_cluster (180)
Interaction (34)
Map_infoMapXPosition3.16596Error0.03869
PositivePositive_clonePB#CPG4
ZK455Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (46)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene