WormBase Tree Display for Gene: WBGene00003981
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WBGene00003981 | SMap | S_parent | Sequence | F18G5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pes-8 | Person_evidence | WBPerson266 | |||||
Sequence_name | F18G5.2 | ||||||||
Molecular_name | F18G5.2a | ||||||||
F18G5.2a.1 | |||||||||
CE53188 | |||||||||
F18G5.2b | |||||||||
CE53356 | |||||||||
F18G5.2b.1 | |||||||||
Other_name | CELE_F18G5.2 | Accession_evidence | NDB | BX284606 | |||||
Public_name | pes-8 | ||||||||
DB_info | Database | AceView | gene | XJ873 | |||||
WormQTL | gene | WBGene00003981 | |||||||
WormFlux | gene | WBGene00003981 | |||||||
NDB | locus_tag | CELE_F18G5.2 | |||||||
NCBI | gene | 191742 | |||||||
RefSeq | protein | NM_001373415.1 | |||||||
NM_001373414.2 | |||||||||
TrEMBL | UniProtAcc | A0A4V6M3D6 | |||||||
A0A4V0INE6 | |||||||||
UniProt_GCRP | UniProtAcc | A0A4V0INE6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pes | ||||||||
Allele (72) | |||||||||
Legacy_information | [C.elegansII] NMK. pes-8:lacZ expression in 3 rectal epithelial cells from L1 onward, spermatheca from L4, uterus in adult (Ut-1, Ut-2, Use);adult male proctodeum. Clone UL#38E12, cosmid F18G5. [Young and Hope 1993; UL] | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00003970 | ||||||||
Ortholog | WBGene00036206 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00154943 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00077303 | Caenorhabditis remanei | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00121064 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00116994 | Pristionchus pacificus | From_analysis | OMA | ||||||
CBOVI.g2607 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g8239 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g170 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g11432 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g6181 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g15251 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g12131 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g17922 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g3130 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g4797 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cnig_chr_X.g22561 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g13410 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00211.g7135 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_02279 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_023269 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g12173 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Sp34_X0051900 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrX_pilon.g19716 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | pes-8 encodes a novel protein that contains a proline-rich region and a predicted transmembrane domain, but no otherwise recognizably conserved domains; pes-8 was identified in promoter trapping screens and based on large-scale RNA-mediated interference (RNAi) screens, appears to be required for egg laying, germline development, locomotion, and regulation of adult lifespan; a pes-8 reporter is expressed at the cell surfaces of the spermathecal valve cell, the uterine wall, the vulva, and the rectal epithelium; strong expression is also detected in the uterus during its development; PES-8 may be required for normal morphology of the openings of the spermathecal valve, the vulva, and the rectum, a hypothesis consistent with its expression pattern and RNAi phenotype. | Paper_evidence | WBPaper00003306 | |||||
WBPaper00005654 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be located in membrane. Expressed in hermaphrodite gonad and rectum. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F18G5.2a | |||||||
F18G5.2b | |||||||||
Corresponding_CDS_history | F18G5.2:wp223 | ||||||||
F18G5.2:wp271 | |||||||||
Corresponding_transcript | F18G5.2a.1 | ||||||||
F18G5.2b.1 | |||||||||
Other_sequence | PPC02034_1 | ||||||||
PP02576 | |||||||||
Associated_feature | WBsf236141 | ||||||||
Experimental_info | RNAi_result | WBRNAi00025139 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00071839 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00044967 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085555 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00008662 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00071625 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr51 | ||||||||
Expr1024632 | |||||||||
Expr1031901 | |||||||||
Expr1148937 | |||||||||
Expr2014838 | |||||||||
Expr2033073 | |||||||||
Drives_construct | WBCnstr00035762 | ||||||||
Construct_product | WBCnstr00035762 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (227) | |||||||||
Interaction (43) | |||||||||
Map_info | Map | X | Position | 0.940254 | |||||
Positive | Positive_clone | F18G5 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00001752 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |