WormBase Tree Display for Gene: WBGene00003953
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| WBGene00003953 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F39H11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pbs-7 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | F39H11.5 | ||||||||
| Molecular_name | F39H11.5 | ||||||||
| F39H11.5.1 | |||||||||
| CE20761 | |||||||||
| Other_name | CELE_F39H11.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | pbs-7 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pbs | ||||||||
| Allele (14) | |||||||||
| Strain | WBStrain00051314 | ||||||||
| WBStrain00051922 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (36) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | pbs-7 encodes a B-type subunit of the 26S proteasome's 20S protease core particle; by homology, PBS-7 is predicted to function in ATP/ubiquitin-dependent nonlysosomal protein degradation; loss of pbs-7 activity via large-scale RNAi screens indicates that, in C. elegans, PBS-7 is required for normal movement and for embryonic, germline, and larval development. | Paper_evidence | WBPaper00004402 | |||||
| WBPaper00004540 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, beta-subunit complex. Is an ortholog of human PSMB4 (proteasome 20S subunit beta 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060916 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9541) | ||||
| Molecular_info | Corresponding_CDS | F39H11.5 | |||||||
| Corresponding_transcript | F39H11.5.1 | ||||||||
| Other_sequence (64) | |||||||||
| Associated_feature | WBsf649408 | ||||||||
| WBsf219963 | |||||||||
| WBsf219964 | |||||||||
| Experimental_info | RNAi_result (29) | ||||||||
| Expr_pattern | Expr1022520 | ||||||||
| Expr1031879 | |||||||||
| Expr1150672 | |||||||||
| Expr2014771 | |||||||||
| Expr2033005 | |||||||||
| Drives_construct | WBCnstr00035779 | ||||||||
| Construct_product | WBCnstr00035779 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (147) | |||||||||
| Interaction (156) | |||||||||
| Map_info | Map | I | Position | 3.01831 | Error | 0.00013 | |||
| Positive | Positive_clone | F39H11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024430 | ||||||||
| WBPaper00029221 | |||||||||
| WBPaper00030965 | |||||||||
| WBPaper00032236 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00036083 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| WBPaper00060474 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
