WormBase Tree Display for Gene: WBGene00003950
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| WBGene00003950 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T20F5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pbs-4 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | T20F5.2 | ||||||||
| Molecular_name | T20F5.2 | ||||||||
| T20F5.2.1 | |||||||||
| CE13818 | |||||||||
| Other_name | CELE_T20F5.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | pbs-4 | ||||||||
| DB_info | Database | AceView | gene | 1E477 | |||||
| WormQTL | gene | WBGene00003950 | |||||||
| WormFlux | gene | WBGene00003950 | |||||||
| NDB | locus_tag | CELE_T20F5.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003950|UniProtKB=P91477 | |||||||
| family | PTHR11599 | ||||||||
| NCBI | gene | 171975 | |||||||
| RefSeq | protein | NM_058860.7 | |||||||
| SwissProt | UniProtAcc | P91477 | |||||||
| TREEFAM | TREEFAM_ID | TF106219 | |||||||
| UniProt_GCRP | UniProtAcc | P91477 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pbs | ||||||||
| Allele (25) | |||||||||
| Strain | WBStrain00037191 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (39) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | pbs-4 encodes a B-type subunit of the 26S proteasome's 20S protease core particle; by homology, PBS-4 is predicted to function in ATP/ubiquitin-dependent nonlysosomal protein degradation; loss of pbs-4 activity via RNAi indicates that, in C. elegans, PBS-4 is required for embryonic, germline, and larval development. | Paper_evidence | WBPaper00004402 | |||||
| WBPaper00005553 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, beta-subunit complex. Is an ortholog of human PSMB2 (proteasome 20S subunit beta 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T20F5.2 | |||||||
| Corresponding_transcript | T20F5.2.1 | ||||||||
| Other_sequence (50) | |||||||||
| Associated_feature | WBsf643167 | ||||||||
| WBsf643168 | |||||||||
| WBsf983271 | |||||||||
| WBsf217456 | |||||||||
| WBsf217457 | |||||||||
| WBsf217458 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Expr1012657 | ||||||||
| Expr1031876 | |||||||||
| Expr1157199 | |||||||||
| Expr2014768 | |||||||||
| Expr2033002 | |||||||||
| Drives_construct | WBCnstr00008739 | ||||||||
| WBCnstr00035781 | |||||||||
| Construct_product | WBCnstr00035781 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction (223) | |||||||||
| Map_info | Map | I | Position | -1.922 | Error | 0.003673 | |||
| Positive | Positive_clone | T20F5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
