WormBase Tree Display for Gene: WBGene00003949
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| WBGene00003949 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y38A8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pbs-3 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | Y38A8.2 | ||||||||
| Molecular_name | Y38A8.2 | ||||||||
| Y38A8.2.1 | |||||||||
| CE07571 | |||||||||
| Other_name | CELE_Y38A8.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | pbs-3 | ||||||||
| DB_info | Database | AceView | gene | 2F244 | |||||
| WormQTL | gene | WBGene00003949 | |||||||
| WormFlux | gene | WBGene00003949 | |||||||
| NDB | locus_tag | CELE_Y38A8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003949|UniProtKB=Q23237 | |||||||
| family | PTHR11599 | ||||||||
| NCBI | gene | 173858 | |||||||
| RefSeq | protein | NM_062512.4 | |||||||
| SwissProt | UniProtAcc | Q23237 | |||||||
| TREEFAM | TREEFAM_ID | TF106216 | |||||||
| UniProt_GCRP | UniProtAcc | Q23237 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pbs | ||||||||
| Allele (14) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP2148 | ||||||||
| Ortholog (38) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | pbs-3 encodes a B-type subunit of the 26S proteasome's 20S protease core particle; by homology, PBS-3 is predicted to function in ATP/ubiquitin-dependent nonlysosomal protein degradation; loss of pbs-3 activity via large-scale RNAi screens indicates that, in C. elegans, PBS-3 is required for embryonic and germline development, movement, normal body coloration, and normal body morphology. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, beta-subunit complex. Is an ortholog of human PSMB3 (proteasome 20S subunit beta 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38A8.2 | |||||||
| Corresponding_transcript | Y38A8.2.1 | ||||||||
| Other_sequence (81) | |||||||||
| Associated_feature | WBsf650029 | ||||||||
| WBsf987752 | |||||||||
| WBsf222981 | |||||||||
| WBsf222982 | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr1017277 | ||||||||
| Expr1031875 | |||||||||
| Expr1159496 | |||||||||
| Expr2014767 | |||||||||
| Expr2033001 | |||||||||
| Drives_construct | WBCnstr00035782 | ||||||||
| Construct_product | WBCnstr00035782 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (138) | |||||||||
| Interaction (227) | |||||||||
| Map_info | Map | II | Position | -2.61997 | Error | 0.003016 | |||
| Positive | Positive_clone | Y38A8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
